make subcycling to work with partial cells #1924


	name: FESOM2 main test

	# Controls when the action will run. Triggers the workflow on push or pull request.

	on: [push, pull_request]


	# A workflow run is made up of one or more jobs that can run sequentially or in parallel
	jobs:
	general_test:
	# Containers must run in Linux based operating systems
	runs-on: ubuntu-latest
	# Docker Hub image that `container-job` executes in
	container: koldunovn/fesom2_test:refactoring2

	# Service containers to run with `gfortran_ubuntu`
	steps:
	# NK: this changes working directory to fesom2
	- uses: actions/checkout@v2

	- name: Compile model (binary)
	run: \|
	bash -l configure.sh ubuntu

	- name: Compile model (library)
	run: \|
	bash ./test/ifs_interface/configure_lib.sh -l

	- name: Library exists
	run: \|
	bash ./test/ifs_interface/check_exist.sh

	- name: Create global test run
	run: \|
	mkrun pi test_pi -m docker

	- name: FESOM2 global test run
	run: \|
	cd work_pi
	chmod +x job_docker_new
	./job_docker_new
	- name: Check global results
	run: \|
	cd work_pi
	fcheck .

	- name: Check restarts
	run: \|
	cd work_pi
	./job_docker_new

	- name: Create channel test run
	run: \|
	mkrun souf test_souf -m docker

	- name: FESOM2 channel test run
	run: \|
	cd work_souf
	chmod +x job_docker_new
	./job_docker_new

	- name: Check channel results
	run: \|
	cd work_souf
	fcheck .

	- name: Check partitioner compilation
	run: \|
	cd mesh_part
	bash -l configure.sh ubuntu

	- name: Run partitioner
	run: \|
	cd work_pi
	cp ../bin/fesom_ini.x .
	./fesom_ini.x

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