update spm. (#483)

* update spm.

* remove doc macro.

CITATION.cff

@@ -4,7 +4,7 @@ message:
   If you use this software, please cite it using the
   metadata from this file.
 type: software
-version: 0.9.2
+version: 0.9.3
 authors:
   - given-names: Sherjeel
     family-names: Shabih

dev-requirements.txt

@@ -28,15 +28,15 @@ colorama==0.4.6
     #   pytest
 contourpy==1.3.1
     # via matplotlib
-coverage==7.6.8
+coverage==7.6.9
     # via pytest-cov
 cycler==0.12.1
     # via matplotlib
 distlib==0.3.9
     # via virtualenv
 filelock==3.16.1
     # via virtualenv
-fonttools==4.55.0
+fonttools==4.55.2
     # via matplotlib
 ghp-import==2.1.0
     # via mkdocs
@@ -76,7 +76,7 @@ markupsafe==3.0.2
     # via
     #   jinja2
     #   mkdocs
-matplotlib==3.9.2
+matplotlib==3.9.3
     # via ase
 mergedeep==1.3.4
     # via
@@ -94,7 +94,7 @@ mkdocs-get-deps==0.2.0
     # via mkdocs
 mkdocs-macros-plugin==1.3.7
     # via pynxtools (pyproject.toml)
-mkdocs-material==9.5.46
+mkdocs-material==9.5.48
     # via pynxtools (pyproject.toml)
 mkdocs-material-extensions==1.3.1
     # via
@@ -149,7 +149,7 @@ pymdown-extensions==10.12
     # via mkdocs-material
 pyparsing==3.2.0
     # via matplotlib
-pytest==8.3.3
+pytest==8.3.4
     # via
     #   pynxtools (pyproject.toml)
     #   pytest-cov
@@ -181,11 +181,11 @@ regex==2024.11.6
     # via mkdocs-material
 requests==2.32.3
     # via mkdocs-material
-ruff==0.8.0
+ruff==0.8.2
     # via pynxtools (pyproject.toml)
 scipy==1.14.1
     # via ase
-six==1.16.0
+six==1.17.0
     # via
     #   anytree
     #   python-dateutil
@@ -195,7 +195,7 @@ super-collections==0.5.3
     # via mkdocs-macros-plugin
 termcolor==2.5.0
     # via mkdocs-macros-plugin
-tomli==2.1.0 ; python_full_version <= '3.11'
+tomli==2.2.1 ; python_full_version <= '3.11'
     # via coverage
 types-pytz==2024.2.0.20241003
     # via pynxtools (pyproject.toml)
@@ -211,7 +211,7 @@ urllib3==2.2.3
     # via
     #   requests
     #   types-requests
-uv==0.5.4
+uv==0.5.7
     # via pynxtools (pyproject.toml)
 virtualenv==20.28.0
     # via pre-commit

docs/reference/plugins.md

@@ -17,7 +17,7 @@ There are a number of plugins available for pynxtools that are maintained within
 - [**pynxtools-raman**](https://github.com/FAIRmat-NFDI/pynxtools-raman): A reader for Raman data.
 
 ### Scanning probe microscopy
-- [**pynxtools-stm**](https://github.com/FAIRmat-NFDI/pynxtools-stm): A reader for scanning tunneling microscopy (SPM) and spectroscopy (STS) data.
+- [**pynxtools-spm**](https://github.com/FAIRmat-NFDI/pynxtools-spm): A reader for scanning tunneling microscopy (SPM) domain data (STM, STS and AFM).
 
 ### X-ray diffraction
 - [**pynxtools-xrd**](https://github.com/FAIRmat-NFDI/pynxtools-xrd): A reader for X-ray diffraction data.

pyproject.toml

@@ -86,7 +86,7 @@ raman = [
     "pynxtools-raman>=0.0.5",
 ]
 stm = [
-    "pynxtools-stm>=1.0.9",
+    "pynxtools-spm>=0.0.0",
 ]
 xps = [
     "pynxtools-xps>=0.4.8",