Feature/3d basis evaluate cherry (#199)

* cherry picked implementation from 3d-basis-evaluate

* added reference implementation of basis functions from feature branch

* added expansion looping and basis evaluations from feature branch

* added jacobi coefficient computation from feature branch

* added explicited template initialisation of function evaluation templates from fature branch

* added unit and integration tests for 3d projection from feature branch

* added 3d evaluation tests from feature branch

* added test_resources for 3d evaluation and projection from feature branch

* removed dead file

* fixed include guard naming

* remove unnessary io from test

* updated NESO-Particles submodule

* correction of comments, tidy up of namespaces and calls to std::pow

CMakeLists.txt

@@ -98,6 +98,9 @@ set(LIB_SRC_FILES
     ${SRC_DIR}/diagnostics.cpp
     ${SRC_DIR}/linear_interpolator_1D.cpp
     ${SRC_DIR}/mesh.cpp
+    ${SRC_DIR}/nektar_interface/basis_reference.cpp
+    ${SRC_DIR}/nektar_interface/expansion_looping/jacobi_coeff_mod_basis.cpp
+    ${SRC_DIR}/nektar_interface/function_evaluation.cpp
     ${SRC_DIR}/nektar_interface/geometry_transport/geometry_transport_3d.cpp
     ${SRC_DIR}/nektar_interface/geometry_transport/halo_extension.cpp
     ${SRC_DIR}/nektar_interface/particle_cell_mapping/map_particles_2d.cpp
@@ -111,7 +114,7 @@ set(LIB_SRC_FILES
     ${SRC_DIR}/run_info.cpp
     ${SRC_DIR}/simulation.cpp
     ${SRC_DIR}/species.cpp)
-
+    
 set(LIB_SRC_FILES_IGNORE ${SRC_DIR}/main.cpp)
 check_file_list(${SRC_DIR} cpp "${LIB_SRC_FILES}" "${LIB_SRC_FILES_IGNORE}")
 
@@ -128,13 +131,24 @@ set(HEADER_FILES
     ${INC_DIR}/linear_interpolator_1D.hpp
     ${INC_DIR}/mesh.hpp
     ${INC_DIR}/nektar_interface/basis_evaluation.hpp
+    ${INC_DIR}/nektar_interface/basis_reference.hpp
     ${INC_DIR}/nektar_interface/bounding_box_intersection.hpp
     ${INC_DIR}/nektar_interface/cell_id_translation.hpp
     ${INC_DIR}/nektar_interface/coordinate_mapping.hpp
+    ${INC_DIR}/nektar_interface/expansion_looping/basis_evaluate_base.hpp
+    ${INC_DIR}/nektar_interface/expansion_looping/expansion_looping.hpp
+    ${INC_DIR}/nektar_interface/expansion_looping/geom_to_expansion_builder.hpp
+    ${INC_DIR}/nektar_interface/expansion_looping/hexahedron.hpp
+    ${INC_DIR}/nektar_interface/expansion_looping/jacobi_coeff_mod_basis.hpp
+    ${INC_DIR}/nektar_interface/expansion_looping/jacobi_expansion_looping_interface.hpp
+    ${INC_DIR}/nektar_interface/expansion_looping/prism.hpp
+    ${INC_DIR}/nektar_interface/expansion_looping/pyramid.hpp
+    ${INC_DIR}/nektar_interface/expansion_looping/quadrilateral.hpp
+    ${INC_DIR}/nektar_interface/expansion_looping/tetrahedron.hpp
+    ${INC_DIR}/nektar_interface/expansion_looping/triangle.hpp
     ${INC_DIR}/nektar_interface/function_bary_evaluation.hpp
     ${INC_DIR}/nektar_interface/function_basis_evaluation.hpp
     ${INC_DIR}/nektar_interface/function_basis_projection.hpp
-    ${INC_DIR}/nektar_interface/function_coupling_base.hpp
     ${INC_DIR}/nektar_interface/function_evaluation.hpp
     ${INC_DIR}/nektar_interface/function_projection.hpp
     ${INC_DIR}/nektar_interface/geometry_transport/geometry_container_3d.hpp