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@ErasmusMC-Bioinformatics

Erasmus Medical Center

Bioinformatics Department

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  1. WeFaceNano WeFaceNano Public

    Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).

    Python 12 1

  2. galaxytools-emc galaxytools-emc Public

    Tool Shed repositories maintained and developed by the Erasmus University Medical Center, following best practices guidelines set out by the Intergalactic Utilities Commission https://wiki.galaxypr…

    Python 3 1

  3. fuma fuma Public

    Forked from yhoogstrate/fuma

    💨🐆 Fusion Matcher: Match predicted fusions according to chromosomal location or gene annotation(s)

    Python 2 3

  4. galaxy-mothur-toolset galaxy-mothur-toolset Public

    All information pertaining to the Galaxy Mothur Toolkit (GMT) project

    Python 2 2

  5. benchAMRking benchAMRking Public

    SCSS 2

  6. Virtual-Normal-Correction Virtual-Normal-Correction Public

    Forked from shiltemann/Virtual-Normal-Correction

    Shell 1

Repositories

Showing 10 of 67 repositories
  • infrastructure Public
    ErasmusMC-Bioinformatics/infrastructure’s past year of commit activity
    Jinja 0 1 1 0 Updated Oct 22, 2024
  • musica Public Forked from marcos-diazg/musica

    MuSiCa - Mutational Signatures in Cancer

    ErasmusMC-Bioinformatics/musica’s past year of commit activity
    R 0 MIT 14 0 0 Updated Sep 26, 2024
  • DL_LCNEC_pRBsubtyping_HE Public
    ErasmusMC-Bioinformatics/DL_LCNEC_pRBsubtyping_HE’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 26, 2024
  • two-step-TL Public
    ErasmusMC-Bioinformatics/two-step-TL’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 16, 2024
  • BenchAMRking-scripts Public

    Code for figures

    ErasmusMC-Bioinformatics/BenchAMRking-scripts’s past year of commit activity
    Python 0 0 0 0 Updated Sep 13, 2024
  • benchAMRking Public
    ErasmusMC-Bioinformatics/benchAMRking’s past year of commit activity
    SCSS 2 CC0-1.0 0 0 0 Updated Sep 5, 2024
  • transferlearningproject Public
    ErasmusMC-Bioinformatics/transferlearningproject’s past year of commit activity
    Python 0 0 0 0 Updated Sep 3, 2024
  • EMC-Neoantigen Public Forked from icbi-lab/nextNEOpi

    nextNEOpi: a comprehensive pipeline for computational neoantigen prediction

    ErasmusMC-Bioinformatics/EMC-Neoantigen’s past year of commit activity
    Nextflow 0 25 0 0 Updated Sep 2, 2024
  • TME_Analyzer Public
    ErasmusMC-Bioinformatics/TME_Analyzer’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 26, 2024
  • EMC-CanMic Public Forked from BirgitRijvers/EMC-MetaMicrobes

    Nextflow pipeline to detect and classify microbial reads in sequencing data from human samples.

    ErasmusMC-Bioinformatics/EMC-CanMic’s past year of commit activity
    Nextflow 0 MIT 1 0 0 Updated Jul 9, 2024
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