Code

Doc2#156

Code

Merged

nickotto merged 56 commits intoEpistasisLab:mainEpistasisLab/tpot2:mainfrom perib:doc2perib/tpot2:doc2Copy head branch name to clipboardOct 10, 2024

+28,984-6,068

Commits

Commits on Sep 18, 2024

• seconds to mins

  perib

  committed
  39b0549

  Copy full SHA for 39b0549

• remove baikal as a dependency. maybe we can re-add it as an optional dependency later

  perib

  committed
  b671a54

  Copy full SHA for b671a54

• reorganized, fixed bug where TPOTEstimator did not correctly set classification=self.classification

  perib

  committed
  812213d

  Copy full SHA for 812213d

• cleanup - removed old, unused function

  perib

  committed
  5ba5f73

  Copy full SHA for 5ba5f73

• add nn.py from tpot1

  perib

  committed
  49e7355

  Copy full SHA for 49e7355

• add nn.py from tpot1

  perib

  committed
  01b639f

  Copy full SHA for 01b639f

• add comments, throw error is max_time_mins is too low and nothing is evaluated in the first generation

  perib

  committed
  ab71986

  Copy full SHA for ab71986

Commits on Sep 19, 2024

• fix search space bug

  perib

  committed
  cca862e

  Copy full SHA for cca862e

• more wiggle room for tests

  perib

  committed
  370afcc

  Copy full SHA for 370afcc

• misc reproducibility bugs

  perib

  committed
  f6d797b

  Copy full SHA for f6d797b

Commits on Sep 20, 2024

• edits

  perib

  committed
  1fe3fc4

  Copy full SHA for 1fe3fc4

• edits

  perib

  committed
  1314eb7

  Copy full SHA for 1314eb7

Commits on Sep 21, 2024

• tutorial 1

  perib

  committed
  48e3eb1

  Copy full SHA for 48e3eb1

• edits

  perib

  committed
  2ee9ac8

  Copy full SHA for 2ee9ac8

• allowed memory to be passed through to linear pipelines (previously only supported graphpipelines)

  perib

  committed
  714b1e8

  Copy full SHA for 714b1e8

• edits

  perib

  committed
  3729137

  Copy full SHA for 3729137

• edit

  perib

  committed
  fc4c4e5

  Copy full SHA for fc4c4e5

• edit

  perib

  committed
  66eaf7a

  Copy full SHA for 66eaf7a

Commits on Sep 23, 2024

• more docs

  perib

  committed
  308fef3

  Copy full SHA for 308fef3

• updated contribute, added graph light template, doc updates

  perib

  committed
  1a891fb

  Copy full SHA for 1a891fb

• docs and bug fixes

  perib

  committed
  bd927f6

  Copy full SHA for bd927f6

• Merge branch 'EpistasisLab:main' into doc2

  perib

  authored
  1d31f0e

  Copy full SHA for 1d31f0e

• documentation, fix wrapper, fix estimatortransformer, rename GraphPipeline to GraphSearchPipeline, add cross_val_predict_cv option to templates, param update

  perib

  committed
  ff8137f

  Copy full SHA for ff8137f

• fix

  perib

  committed
  4b7b9b6

  Copy full SHA for 4b7b9b6

Commits on Sep 24, 2024

• more tutorial edits

  perib

  committed
  f4b9adf

  Copy full SHA for f4b9adf

• removed cross_val_predict_cv from the estimators. use wrapper pipeline instead (or set in graphsearchpipeline

  perib

  committed
  01f3a78

  Copy full SHA for 01f3a78

• replaces deprecated call with replacement function

  perib

  committed
  29a4745

  Copy full SHA for 29a4745

• add iterative imputer with learned estimators and update tutorials more

  perib

  committed
  b0d58a8

  Copy full SHA for b0d58a8

Commits on Sep 25, 2024

• removed unused param in estimator, add extra rng check so different sub-search spaces get different random seeds

  perib

  committed
  1fceb22

  Copy full SHA for 1fceb22

• edits to tutorial 2, rewrote tutorial 3

  perib

  committed
  602e89e

  Copy full SHA for 602e89e

• add fancy search space

  perib

  committed
  a21aa7b

  Copy full SHA for a21aa7b

• fssnode now always selects a new feature set when mutation is called - previously it could sometimes select the same set and not actually change

  perib

  committed
  9ff1187

  Copy full SHA for 9ff1187

• reorder tutorials, fill in feature set selector tutorial and genetic feature set selector

  perib

  committed
  8a80f57

  Copy full SHA for 8a80f57

• fix seconds to mins conversion

  perib

  committed
  70a5ae8

  Copy full SHA for 70a5ae8

• fix mdr search space, set reproducible defaults for cross_val_predict_cv

  perib

  committed
  79e4291

  Copy full SHA for 79e4291

• rename SklearnIndividualGenerator to SearchSpace

  perib

  committed
  0b3a9b6

  Copy full SHA for 0b3a9b6

• more tutorial edits

  perib

  committed
  78fe002

  Copy full SHA for 78fe002

Commits on Sep 26, 2024

• documentation

  perib

  committed
  3c351b5

  Copy full SHA for 3c351b5

• evolver docs

  perib

  committed
  f28e914

  Copy full SHA for f28e914

• more docs

  perib

  committed
  b0d38a7

  Copy full SHA for b0d38a7

• even more documentation

  perib

  committed
  eddaeef

  Copy full SHA for eddaeef

Commits on Sep 28, 2024

• docs

  perib

  committed
  cfb12b5

  Copy full SHA for cfb12b5

Commits on Sep 29, 2024

• fix and edits

  perib

  committed
  3a2ca86

  Copy full SHA for 3a2ca86

• pass through memory/kwards to all inner search spaces

  perib

  committed
  d412884

  Copy full SHA for d412884

• edit

  perib

  committed
  e461ff3

  Copy full SHA for e461ff3

• whitespace del

  perib

  committed
  a14dd13

  Copy full SHA for a14dd13

Commits on Sep 30, 2024

• update configspace min version

  perib

  committed
  eb8db5d

  Copy full SHA for eb8db5d

• removed now unnecessary np.random.seed

  perib

  committed
  7e2d3fb

  Copy full SHA for 7e2d3fb

Commits on Oct 1, 2024

• fix to selection pruning - update offspring scores list when selecting new cur_individuals. also remove invalid individuals before calculating pruning methods

  perib

  committed
  712484b

  Copy full SHA for 712484b

• Merge remote-tracking branch 'origin/doc2' into doc2

  perib

  committed
  80d8da6

  Copy full SHA for 80d8da6

• cross val predict fix

  perib

  committed
  cd4f27b

  Copy full SHA for cd4f27b

Commits on Oct 2, 2024

• update tutorial with more reasonable params

  perib

  committed
  5f91594

  Copy full SHA for 5f91594

• allow graphsklearn to take in either ints or cv splitters for cv

  perib

  committed
  6c356da

  Copy full SHA for 6c356da

• edit

  perib

  committed
  bfb40d9

  Copy full SHA for bfb40d9

Commits on Oct 8, 2024

• cluster max with features and not samples

  perib

  committed
  38fe6af

  Copy full SHA for 38fe6af

Commits on Oct 10, 2024

• updating the import calibration

  nickmatsumoto

  committed
  08ad02f

  Copy full SHA for 08ad02f