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added workshop table
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haeussma committed Sep 11, 2024
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3 changes: 3 additions & 0 deletions docs/workshop_2024/hackathon.md
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# Hackathon

## Description
60 changes: 60 additions & 0 deletions docs/workshop_2024/schedule.md
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# Programme

## 24.9.2024

### Session 1: Status and application of the EnzymeML platform

| Time | Talk |
|-------|--------------------------------------------------------------------------------------------------|
| 9:00 | **Jürgen Pleiss**:<br>Welcome and overview on EnzymeML activities |
| 9:30 | **Jan Range, Max Häussler, Torsten Giess**:<br>Demonstration of EnzymeML tools |
| 12:00 | _End of session 1 and lunch_ |

### Session 2: Hackathon: managing your own data with EnzymeML tools

| Time | Talk |
|-------|--------------------------------------------------------------------------------------------------|
| 13:30 | **Jan Range, Max Häussler, Torsten Giess & all participants**:<br>Read in, and analyze your own datasets |
| 17:00 | _End of session 2_ |
| 17:15 | _Excursion_ |
| 19:30 | _Dinner_ |

## 25.9.2024

### Session 3: Acquisition of data and metadata

| Time | Talk |
|-------|--------------------------------------------------------------------------------------------------|
| 9:00 | **Johann Rohwer**:<br>LabNexus: an open-source enzyme kinetics data automation web application |
| 9:45 | **Marilize Le Roes-Hill**:<br>Expanding the enzyme 'reactome' via high-throughput experimentation – is reproducibility an issue? |
| 10:30 | _Coffee break_ |
| 11:00 | **Nicole Jung**:<br>tba |
| 11:45 | **Katrin Rosenthal**:<br>Challenges and solutions for digital (un)structured data in biocatalysis |
| 12:30 | _End of session 3 and lunch_ |

### Session 4: Data analysis, modelling, optimization, and design of experiment

| Time | Talk |
|-------|--------------------------------------------------------------------------------------------------|
| 14:00 | **Zvjezdana Findrik**:<br>Modelling approach in the biocatalytic process optimization and design |
| 14:45 | **Andreas Bommarius**:<br>Biocatalysis in multiphase reactors |
| 15:30 | _Coffee break_ |
| 16:00 | **Jenny Andexer**:<br>tba |
| 16:45 | **Sebastian Höpfl**:<br>Optimal experimental design in biocatalysis - from Gaussian processes towards Bayesian statistics |
| 17:30 | _End of session 4_ |
| 19:30 | _Dinner_ |

## 26.9.2024

### Session 5: Infrastructure: what comes next

| Time | Talk |
|-------|--------------------------------------------------------------------------------------------------|
| 9:00 | **Carine Vergne-Vaxelaire**:<br>High throughput screening data on enzyme activity: a first proposal for user-friendly data integration into EnzymeML workflow |
| 9:45 | **Frank Bergmann**:<br>tba |
| 10:30 | _Coffee break_ |
| 11:00 | **Ulrike Wittig**:<br>Using EnzymeML to exchange and publish reaction kinetics data in SABIO-RK |
| 11:45 | **Carsten Kettner**:<br>Extending STRENDA DB light |
| 12:30 | _End of session 5 and lunch_ |

### Session 6: Outlook and planning
3 changes: 3 additions & 0 deletions mkdocs.yml
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nav:
- Home: index.md
- EnzymeML Workshop 2024:
- Programme: workshop_2024/schedule.md
- Hackathon: workshop_2024/hackathon.md
- DIY:
- Getting started: getting_started.md
- Python basics and manipulation of data: load_and_manipulate.md
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