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editing static content for 114 #848
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addign some new pages, editing others, and updating the strains page for rodents
Hi @EreboPSilva .. I think the text on comparative data in Any thoughts (@EreboPSilva and @kamaldodiya) on whether it would be better to suggest a change in this PR or submit a separate pull request? |
<p>We generated a multiple genome alignment of all the genomes from the The Mouse Genomes Project with <i>Mus musculus</i>, <i>Rattus norvegicus</i> and additional four Mus species using our EPO pipeline. Additionally, we have computed a LastZ alignment of <i>Mus musculus</i> and <i>Mus spretus</i>.</p> | ||
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<p>We provide two sets of gene-trees and orthologues in Ensembl. The standard gene-trees and orthologues comprise genes from one representative for every Ensembl species, whilst the Murinae-specific gene-trees and orthologues comprise genes from all mouse strains and include genes from <i>Mus musculus</i>, <i>Mus spretus</i> and <i>Rattus norvegicus</i>. A stepwise approach via one these three species is required in order to compare genes from mouse strains to genes from species not in the Murinae set.</p> |
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A suggestion it is. Now it's my turn to ask @EreboPSilva and @ens-sb to check if the updated text tallies with your understanding.
<p>We generated a multiple genome alignment of all the genomes from the The Mouse Genomes Project with <i>Mus musculus</i>, <i>Rattus norvegicus</i> and additional four Mus species using our EPO pipeline. Additionally, we have computed a LastZ alignment of <i>Mus musculus</i> and <i>Mus spretus</i>.</p> | |
<p>We provide two sets of gene-trees and orthologues in Ensembl. The standard gene-trees and orthologues comprise genes from one representative for every Ensembl species, whilst the Murinae-specific gene-trees and orthologues comprise genes from all mouse strains and include genes from <i>Mus musculus</i>, <i>Mus spretus</i> and <i>Rattus norvegicus</i>. A stepwise approach via one these three species is required in order to compare genes from mouse strains to genes from species not in the Murinae set.</p> | |
<p>Using our EPO pipeline, we generated a multiple genome alignment of 16 of the | |
reference-quality genomes from the The Mouse Genomes Project with <i>Mus | |
musculus</i>, <i>Rattus norvegicus</i> and an additional three <i>Mus</i> | |
species: <i>Mus caroli</i>, <i>Mus pahari</i> and <i>Mus | |
spicilegus</i>. Additionally, we have computed a LastZ alignment of <i>Mus | |
spretus</i> and the three additional <i>Mus</i> species against the <i>Mus | |
musculus</i> reference genome.</p> | |
<p>We provide multiple sets of gene-trees and orthologues in Ensembl, two of | |
which include genes from a mouse genome. The standard gene-trees and | |
orthologues comprise genes from representatives of selected Ensembl species, | |
whilst the Murinae-specific gene-trees and orthologues comprise genes from | |
all mouse strains and include genes from <i>Mus musculus</i>, <i>Rattus | |
norvegicus</i>, <i>Mus spretus</i> and the three aforementioned <i>Mus</i> | |
species. A stepwise approach via one of these six species is required in | |
order to compare genes from mouse strains to genes from species not in the | |
Murinae set.</p> |
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Thanks @twalsh-ebi ! Looks good to me!
for genebuild content:
addign some new pages, editing others, and updating the strains page for rodents
We havent changed anything from the comparative analysis section on the mouse strains file, and we'd like to check with compara if that's still current and ok, so mentioning here @ens-sb and @twalsh-ebi so that they can offer their view on the topic.
I'd like to also wait for them to approve to merge anything, unless time is of the esence.