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v11022024
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@brunocontrerasmoreira
brunocontrerasmoreira committed Feb 8, 2024
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15112023: removed bug from 25102023 that impaired removal of non-local genes, this duplicated a few clusters
23112023: match_cluster.pl now takes a complete pangene results folder ie Oryza_nivara_v1chr1_alltaxa_5neigh_algMmap_
24112023: added rename_pangenes.pl to assing pangene IDs to previously computed clusters
10012024: fixed bug in handling - strand coords in sub query2ref_coords
11012024: sub _parseCIGARfeature handles correctly 1bp CS-type SNPs when computing overlap with optional query coord

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