!!! This project is curently under development. Some functions might not work properly

Description

Create summary from NCBI RAPT pipeline results files.

Notebooks

RAPT result analysis File:

combineResults.ipynb - parse results files and create summuries

Python Scripts

combine.py - create gene product summary in a excel file

IN: Result folders from NCBI RAPT pipline with:

• assembly_stat_report.tsv
• annot.gbk
• ani-tax-report.xml

Out: CSV summary - anotationStat.csv

Dependencies

• pandas https://pandas.pydata.org/
• BioPython https://biopython.org/