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Merge pull request svalinn#105 from svalinn/oo_version
Object-oriented upgrade
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name: Regular CI testing for parastell | ||
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on: | ||
# allows us to run workflows manually | ||
workflow_dispatch: | ||
pull_request: | ||
paths-ignore: | ||
- 'Dockerfile' | ||
- '.github/workflows/docker_publish.yml' | ||
- 'environment.yml' | ||
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jobs: | ||
test-dependency-img: | ||
runs-on: ubuntu-latest | ||
container: ghcr.io/svalinn/parastell-ci | ||
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name: Perform CI Tests | ||
steps: | ||
- name: Checkout repository | ||
uses: actions/checkout@v4 | ||
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- name: Populate environment and run tests | ||
run: | | ||
. /opt/etc/bashrc | ||
sed -e "s/@SERVER@/${rlmSERVER}/" -e "s/@PASSWORD@/${rlmPASSWD}/" /opt/Coreform-Cubit-2023.11/bin/licenses/rlmcloud.in > /opt/Coreform-Cubit-2023.11/bin/licenses/rlmcloud.lic | ||
export PYTHONPATH=${PYTHONPATH}:`pwd` | ||
cd tests | ||
pytest -v . | ||
env: | ||
rlmSERVER: ${{ secrets.RLMSERVER }} | ||
rlmPASSWD: ${{ secrets.RLMPASSWORD }} |
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name: Build & publish Docker image for ParaStell CI | ||
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on: | ||
# allows us to run workflows manually | ||
workflow_dispatch: | ||
push: | ||
paths: | ||
- 'Dockerfile' | ||
- '.github/workflows/docker_publish.yml' | ||
- 'environment.yml' | ||
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jobs: | ||
build-dependency-img: | ||
runs-on: ubuntu-latest | ||
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name: Install Dependencies | ||
steps: | ||
- name: Checkout repository | ||
uses: actions/checkout@v4 | ||
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- name: Set up Docker Buildx | ||
uses: docker/setup-buildx-action@v3 | ||
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- name: Log into GitHub Container Registry | ||
uses: docker/login-action@v3 | ||
with: | ||
registry: ghcr.io | ||
username: ${{ github.repository_owner }} | ||
password: ${{ secrets.GITHUB_TOKEN }} | ||
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- name: Build and push ParaStell Docker image | ||
id: build-parastell | ||
uses: docker/build-push-action@v5 | ||
with: | ||
cache-from: type=registry,ref=ghcr.io/svalinn/parastell:ci-layer-cache | ||
cache-to: type=registry,ref=ghcr.io/svalinn/parastell:ci-layer-cache,mode=max | ||
file: Dockerfile | ||
push: true | ||
target: parastell-deps | ||
tags: ghcr.io/svalinn/parastell-ci | ||
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test-dependency-img: | ||
needs: build-dependency-img | ||
runs-on: ubuntu-latest | ||
container: ghcr.io/svalinn/parastell-ci | ||
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name: Test CI Image | ||
steps: | ||
- name: Checkout repository | ||
uses: actions/checkout@v4 | ||
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- name: Populate environment and run tests | ||
run: | | ||
. /opt/etc/bashrc | ||
sed -e "s/@SERVER@/${rlmSERVER}/" -e "s/@PASSWORD@/${rlmPASSWD}/" /opt/Coreform-Cubit-2023.11/bin/licenses/rlmcloud.in > /opt/Coreform-Cubit-2023.11/bin/licenses/rlmcloud.lic | ||
export PYTHONPATH=${PYTHONPATH}:`pwd` | ||
cd tests | ||
pytest -v . | ||
env: | ||
rlmSERVER: ${{ secrets.RLMSERVER }} | ||
rlmPASSWD: ${{ secrets.RLMPASSWORD }} |
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FROM continuumio/miniconda3 as parastell-deps | ||
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ENV TZ=America/Chicago | ||
RUN ln -snf /usr/share/zoneinfo/$TZ /etc/localtime && echo $TZ > /etc/timezone | ||
RUN apt-get update -y | ||
RUN apt-get upgrade -y | ||
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# Install dependencies | ||
RUN apt-get install -y libgl1-mesa-glx \ | ||
libgl1-mesa-dev \ | ||
libglu1-mesa-dev \ | ||
freeglut3-dev \ | ||
libosmesa6 \ | ||
libosmesa6-dev \ | ||
libgles2-mesa-dev \ | ||
curl \ | ||
wget \ | ||
libx11-6 \ | ||
libxt6 \ | ||
libgl1 \ | ||
libxcb-icccm4 \ | ||
libxcb-image0 \ | ||
libxcb-keysyms1 \ | ||
libxcb-render-util0 \ | ||
libxkbcommon-x11-0 \ | ||
libxcb-randr0 \ | ||
libxcb-xinerama0 \ | ||
libxm4 \ | ||
libtiff5 \ | ||
libxcursor1 \ | ||
libxinerama1 | ||
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# Download Coreform Cubit | ||
RUN wget -O /cubit.deb https://f002.backblazeb2.com/file/cubit-downloads/Coreform-Cubit/Releases/Linux/Coreform-Cubit-2023.11%2B43088-Lin64.deb | ||
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# Install Cubit | ||
RUN dpkg -i cubit.deb | ||
ENV PYTHONPATH=/opt/Coreform-Cubit-2023.11/bin/ | ||
COPY ./rlmcloud.in /opt/Coreform-Cubit-2023.11/bin/licenses/rlmcloud.in | ||
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RUN mkdir -p /opt/etc | ||
RUN cp /root/.bashrc /opt/etc/bashrc | ||
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# Install Python dependencies in parastell env conda environment | ||
COPY ./environment.yml /environment.yml | ||
RUN conda env create -f environment.yml | ||
RUN echo "conda activate parastell_env" >> /opt/etc/bashrc | ||
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WORKDIR /opt | ||
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# Install PyStell-UW | ||
RUN git clone https://github.com/aaroncbader/pystell_uw.git | ||
ENV PYTHONPATH=$PYTHONPATH:/opt/pystell_uw | ||
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WORKDIR / |
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