Create workflow_submit_model_forecasts.yml

.github/workflows/workflow_submit_model_forecasts.yml

@@ -0,0 +1,76 @@
+  name: Submit_RespiCast_Forecasts
+  # Firts step is to define di events that can trigger this workflow
+  on:
+    # Run upon previous GenerateModelOutput completion
+    workflow_run:
+      workflows: [Generate_RespiCast_Forecasts]
+      types:
+        - completed
+    # Or you can manually trigger the workflow
+    workflow_dispatch:
+
+  jobs:
+    create_PR_job:
+      runs-on: ubuntu-latest
+      steps:
+
+        # Checkout your forked repository - main branch -
+        # where this action is currently hosted
+        # ---------------------------------------------------
+        - name: checkout forked repository
+          uses: actions/checkout@v3
+          with:
+            ref: main
+            token: ${{ secrets.GITHUB_TOKEN }}
+
+        # Checkout the model data repository - main branch -
+        # This is the repository where previous wf saved the model output data
+        # In this example data repo is https://github.com/your_organization/data-repo
+        # -----------------------------------------------------------------------------
+        - name: checkout data repository
+          uses: actions/checkout@v3
+          with:
+            ref: 'main' # the git branch to work on
+            token: ${{ secrets.GITHUB_TOKEN }}
+            repository: 'EU-ECDC/ECDC-Mathematical-Models'
+            path: './data-repo/' # Relative path under $GITHUB_WORKSPACE to place the repository
+
+
+
+        # Set the default remote repository to use when querying the GitHub API for the locally cloned repository.
+        - run: gh repo set-default european-modelling-hubs/flu-forecast-hub
+          env:
+              GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+
+
+        # Sync forked repo main branch, pull and then switch to a new brench
+        - run: |
+            git config --global user.email "YourGitHubUserEmail"
+            git config --global user.name "YourGitHubUserName"
+            gh repo sync your_organization/flu-forecast-hub -b main
+            git pull
+            git checkout -b my-branch
+
+          env:
+              GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+
+        # make a copy of the needed files from source repo to local fork
+        - name: Copy model-output file
+          run: cp ./data-repo/model-output_filepath local_fliepath
+
+        # commit change to a new brach! This step is needed in order
+        # to succesfully open the subsequent pull request
+        - run: |
+            git add local_fliepath
+            git commit -m "Git Commit comment"
+            git push -u origin my-branch
+
+
+        # Finally, open the pull request from local my-branch to the main branch
+        # secrets.MY_PAT_SECRET is a repository secret you have to create in your forked repository
+        # containing a valid PERSONAL ACCESS TOKEN for YourGitHubUserName.
+        # Without this secret the pr create fails with "Resource not accessible by integration" error
+       - name: Open the pull requests
+          run: gh pr create --head  YourGitHubUserName:my-branch  --base main --title 'PR Title' --body 'PR Body'
+          env:
+            GH_TOKEN: ${{ secrets.MY_PAT_SECRET  }}