Submit_RespiCast-SyndromicIndicators_Forecasts #40
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| name: Submit_RespiCast-SyndromicIndicators_Forecasts | |
| # Firts step is to define di events that can trigger this workflow | |
| on: | |
| # Run upon previous GenerateModelOutput completion | |
| workflow_run: | |
| workflows: [Generate_RespiCast_Forecasts] | |
| types: | |
| - completed | |
| # Or you can manually trigger the workflow | |
| workflow_dispatch: | |
| jobs: | |
| create_PR_job: | |
| permissions: | |
| contents: write # Allows pushing changes to the repository | |
| pages: write | |
| runs-on: ubuntu-latest | |
| steps: | |
| # Step 1: Checkout the source repository (ECDC-Mathematical-Models) | |
| - name: Checkout source repository | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: 'EU-ECDC/ECDC-Mathematical-Models' | |
| ref: 'main' | |
| path: './source-repo' | |
| # Step 2: Checkout the destination repository (RespiCast-SyndromicIndicators) | |
| - name: Checkout destination repository | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: 'european-modelling-hubs/RespiCast-SyndromicIndicators' | |
| ref: 'main' | |
| path: './destination-repo' | |
| # Step 3: Calculate Wednesday's date of the current week | |
| - name: Calculate Wednesday's date | |
| id: calculate_wednesday | |
| run: | | |
| # Get the current day of the week (1=Monday, ..., 7=Sunday) | |
| weekday=$(date +%u) | |
| # Calculate how many days to add or subtract to get to Wednesday (3) | |
| offset=$((3 - weekday)) | |
| # Calculate the date of the Wednesday (if offset is negative, subtract days) | |
| wednesday_date=$(date -d "$offset days" +%Y-%m-%d) | |
| echo "Wednesday's date is $wednesday_date" | |
| # Set the output | |
| echo "::set-output name=wednesday_date::$wednesday_date" | |
| # Step 3a: Debug file existence | |
| - name: Debug file existence | |
| run: | | |
| echo "Source directory files:" | |
| ls ./source-repo/Forecasting-hubs_models/model_output/Syndromic_indicators/ | |
| echo "Destination directory:" | |
| ls ./destination-repo/model-output/ | |
| # Step 4: Sync destination repo and create a new branch | |
| - name: Create a new branch | |
| run: | | |
| git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com" | |
| git config --global user.name "github-actions[bot]" | |
| cd ./destination-repo | |
| git config --unset-all http.https://github.com/.extraheader | |
| git checkout -b add-results-RespiCast-SyndromicIndicators | |
| # Step 5: Copy the two model-output files to the destination repository | |
| - name: Copy model-output files | |
| run: | | |
| wednesday_date=${{ steps.calculate_wednesday.outputs.wednesday_date }} | |
| cp ./source-repo/Forecasting-hubs_models/model_output/Syndromic_indicators/${wednesday_date}-ECDC-soca_simplex.csv \ | |
| ./destination-repo/model-output/ECDC-soca_simplex/ | |
| cp ./source-repo/Forecasting-hubs_models/model_output/Syndromic_indicators/${wednesday_date}-ECDC-SARIMA.csv \ | |
| ./destination-repo/model-output/ECDC-SARIMA/ | |
| shell: bash | |
| # Step 6: Commit the files to the new branch | |
| - name: Commit changes | |
| run: | | |
| cd ./destination-repo | |
| git status # Check what changes are detected | |
| wednesday_date=${{ steps.calculate_wednesday.outputs.wednesday_date }} | |
| git add ./model-output/ECDC-soca_simplex/${wednesday_date}-ECDC-soca_simplex.csv \ | |
| ./model-output/ECDC-SARIMA/${wednesday_date}-ECDC-SARIMA.csv | |
| git status # Verify if the files were staged | |
| git commit -m "Submitting forecasts of Syndromic_indicators - soca_simplex and SARIMA models" | |
| #git push https://x-access-token:${{ secrets.Secret_PUSH_ACCESS_RespiCast }}@github.com/european-modelling-hubs/RespiCast-SyndromicIndicators.git main | |
| git push https://x-access-token:${{ secrets.Secret_PUSH_ACCESS_RespiCast }}@github.com/european-modelling-hubs/RespiCast-SyndromicIndicators.git add-results-RespiCast-SyndromicIndicators | |
| # Step 7: Open a pull request | |
| - name: Create a pull request | |
| run: | | |
| cd ./destination-repo | |
| gh pr create --head add-results-RespiCast-SyndromicIndicators \ | |
| --base main \ | |
| --title "Submitting ECDC forecasts" \ | |
| --body "This PR adds the ECDC forecasts to RespiCast repo." | |
| env: | |
| GH_TOKEN: ${{ secrets.Secret_PUSH_ACCESS_RespiCast }} | |