Submit_RespiCast-SyndromicIndicators_Forecasts #3
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| name: Submit_RespiCast_Forecasts | |
| # Firts step is to define di events that can trigger this workflow | |
| on: | |
| # Run upon previous GenerateModelOutput completion | |
| workflow_run: | |
| workflows: [Generate_RespiCast_Forecasts] | |
| types: | |
| - completed | |
| # Or you can manually trigger the workflow | |
| workflow_dispatch: | |
| jobs: | |
| create_PR_job: | |
| runs-on: ubuntu-latest | |
| steps: | |
| # Step 1: Checkout the source repository (ECDC-Mathematical-Models) | |
| - name: Checkout source repository | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: 'EU-ECDC/ECDC-Mathematical-Models' | |
| ref: 'main' | |
| path: './source-repo' | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| # Step 2: Checkout the destination repository (RespiCast-SyndromicIndicators) | |
| - name: Checkout destination repository | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: 'european-modelling-hubs/RespiCast-SyndromicIndicators' | |
| ref: 'main' | |
| path: './destination-repo' | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| # Step 3: Sync destination repo and create a new branch | |
| - name: Create a new branch | |
| run: | | |
| git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com" | |
| git config --global user.name "github-actions[bot]" | |
| cd ./destination-repo | |
| git checkout -b add-results-ILI-ARI | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| # Step 4: Copy the two model-output files to the destination repository | |
| - name: Copy model-output files | |
| run: | | |
| cp ./source-repo/Forecasting-hubs_models/model_output/Syndromic_indicators/2024-11-27-ECDC-soca_simplex.csv \ | |
| ./destination-repo/model-output/ECDC-soca_simplex/ | |
| cp ./source-repo/Forecasting-hubs_models/model_output/Syndromic_indicators/2024-11-27-ECDC-SARIMA.csv \ | |
| ./destination-repo/model-output/ECDC-SARIMA/ | |
| shell: bash | |
| # Step 5: Commit the files to the new branch | |
| - name: Commit changes | |
| run: | | |
| cd ./destination-repo | |
| git add ./model-output/ECDC-soca_simplex/2024-11-27-ECDC-soca_simplex.csv \ | |
| ./model-output/ECDC-SARIMA/2024-11-27-ECDC-SARIMA.csv | |
| git commit -m "Submitting forecasts of Syndromic_indicators - soca_simplex and SARIMA models" | |
| git push -u origin add-results-files | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| # Step 6: Open a pull request | |
| - name: Create a pull request | |
| run: | | |
| cd ./destination-repo | |
| gh pr create --head github-actions[bot]:add-results-files \ | |
| --base main \ | |
| --title "Submitting ECDC forecasts" \ | |
| --body "This PR adds the ECDC forecasts to RespiCast repo." | |
| env: | |
| GH_TOKEN: ${{ secrets.MY_PAT_SECRET }} | |