ETL-UK-Biobank v2.1.0

Fixes and improvements:

• #355
• #356
• #358

ETL-UK-Biobank v2.0.1

Hotfix #353

ETL-UK-Biobank v2.0.0

Major updates:

• #328
• #335
• #339
• #331
• #330
• #337
• #332
• #340
• #324

ETL-UK-Biobank v1.4.1

Two fixes:

• Fix stem table to drug exposure when end date is missing #322
• Improved error reporting #321

ETL-UK-Biobank v1.4.0

Changes in v1.4.0:

• Fix in short ICD codes #309
• Several memory use improvements
• GP clinical follows domain target concept #113
• Baseline field mapping to numeric and value #258

ETL-UK-Biobank v1.3.1

Fix for baseline to person #307

ETL-UK-Biobank v1.3.0

Changes in v1.3.0:

• Lower memory usage by using batch insert and reading source files as generator where possible #300 #306
• Handle read v2 codes in gp covid tpp clinical table #295
• Add handling of placeholder dates gp data #280 #290
• Add mapping of local EMIS script codes #239

ETL-UK-Biobank v1.2.0

Changes in v1.2.0:

• Device ids of blood assays from baseline field mapped to unique_device_id #31
• Batch transformation for covid19 tables #298
• Config parameter to toggle between GP sources ('regular' and COVID19) #299

ETL-UK-Biobank v1.1.0

Various fixes after first full ETL run.

• #254 , #251
• Edit DQD thresholds
• Fix for visit id creation, potentially fixing #255
• Update to CTV3 code mapping
• Update to baseline code mapping
• Mapping from ICD10 to ICDO3
• Creation of vocabulary views
• Parameterise all sql queries

ETL-UK-Biobank v1.0.1

New Features

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Fixes

• Hotfix for pandas version (see https://github.com/thehyve/delphyne/issues/164)