adding defaults conf for ri-tools

EGA-archive · Oct 22, 2024 · a5e0bb9 · a5e0bb9
1 parent b8049a5
commit a5e0bb9
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Showing 2 changed files with 5 additions and 4 deletions.
diff --git a/beacon/permissions/datasets/public_datasets.yml b/beacon/permissions/datasets/public_datasets.yml
@@ -2,4 +2,5 @@ public_datasets:
 - CINECA_synthetic_cohort_EUROPE_UK1
 - CINECA_dataset
 - rd-connect_dataset
-- coadread_tcga_pan_can_atlas_2018
+- coadread_tcga_pan_can_atlas_2018
+- COVID_pop11_fin_2
diff --git a/ri-tools/conf/conf.py b/ri-tools/conf/conf.py
@@ -4,9 +4,9 @@
 
 #### VCF Conversion config parameters ####
 allele_frequency=1 # introduce float number, leave 1 if you want to convert all the variants
-reference_genome='GRCh38' # Choose one between NCBI36, GRCh37, GRCh38
-datasetId='coadread_tcga_pan_can_atlas_2018'
-case_level_data=True
+reference_genome='GRCh37' # Choose one between NCBI36, GRCh37, GRCh38
+datasetId='COVID_pop11_fin_2'
+case_level_data=False
 
 ### MongoDB parameters ###
 database_host = 'mongo'