Set up CTest

.azure-pipelines.yml

@@ -9,37 +9,41 @@ pr:
 
 jobs:
 - job:
+  # FIXME remove unused variables
   variables:
     BLASPP_HOME: '/usr/local'
     CEI_SUDO: 'sudo'
     CEI_TMP: '/tmp/cei'
     CMAKE_GENERATOR: 'Ninja'
     FFTW_HOME: '/usr'
     LAPACKPP_HOME: '/usr/local'
-    OMP_NUM_THREADS: 1
     WARPX_CI_CCACHE: 'TRUE'
-    WARPX_CI_CLEAN_TESTS: 'TRUE'
-    WARPX_CI_NUM_MAKE_JOBS: 2
-    WARPX_CI_OPENPMD: 'TRUE'
-    WARPX_CI_TMP: '/tmp/ci'
+    #WARPX_OPENPMD: 'TRUE'
 
   strategy:
     matrix:
-      cartesian1d:
-        WARPX_CI_REGULAR_CARTESIAN_1D: 'TRUE'
-        WARPX_CI_PSATD: 'FALSE'
-      cartesian2d:
-        WARPX_CI_REGULAR_CARTESIAN_2D: 'TRUE'
-      cartesian3d:
-        WARPX_CI_REGULAR_CARTESIAN_3D: 'TRUE'
-      single_precision:
-        WARPX_CI_SINGLE_PRECISION: 'TRUE'
-      rz_or_nompi:
-        WARPX_CI_RZ_OR_NOMPI: 'TRUE'
-      qed:
-        WARPX_CI_QED: 'TRUE'
-      embedded_boundary:
-        WARPX_CI_EB: 'TRUE'
+      # Cartesian 1D
+      cartesian_1d:
+        WARPX_CMAKE_FLAGS: -DWarpX_DIMS=1 -DWarpX_FFT=ON -DWarpX_PYTHON=ON
+      # Cartesian 2D
+      cartesian_2d:
+        WARPX_CMAKE_FLAGS: -DWarpX_DIMS=2 -DWarpX_FFT=ON -DWarpX_PYTHON=ON
+      # Cartesian 3D
+      cartesian_3d:
+        WARPX_CMAKE_FLAGS: -DWarpX_DIMS=3 -DWarpX_FFT=ON -DWarpX_PYTHON=ON
+        WARPX_HEFFTE: 'TRUE'
+      # Cylindrical RZ
+      cylindrical_rz:
+        WARPX_CMAKE_FLAGS: -DWarpX_DIMS=RZ -DWarpX_FFT=ON -DWarpX_PYTHON=ON
+        WARPX_RZ_FFT: 'TRUE'
+      # embedded boundaries
+      embedded_boundaries:
+        WARPX_CMAKE_FLAGS: -DWarpX_DIMS='1;2;3;RZ' -DWarpX_FFT=ON -DWarpX_PYTHON=ON -DWarpX_EB=ON
+        WARPX_RZ_FFT: 'TRUE'
+      # single precision
+      #single_precision:
+      #  WARPX_CMAKE_FLAGS: -DWarpX_DIMS='1;2;3;RZ' -DWarpX_FFT=ON -DWarpX_PYTHON=ON -DWarpX_PRECISION=SINGLE
+      #  WARPX_RZ_FFT: 'TRUE'
 
   # default: 60; maximum: 360
   timeoutInMinutes: 240
@@ -51,9 +55,8 @@ jobs:
   - task: Cache@2
     continueOnError: true
     inputs:
-      key: 'Ccache | "$(System.JobName)" | .azure-pipelines.yml | cmake/dependencies/AMReX.cmake | run_test.sh'
+      key: 'Ccache | "$(System.JobName)" | .azure-pipelines.yml | cmake/dependencies/AMReX.cmake'
       restoreKeys: |
-         Ccache | "$(System.JobName)" | .azure-pipelines.yml | cmake/dependencies/AMReX.cmake | run_test.sh
          Ccache | "$(System.JobName)" | .azure-pipelines.yml | cmake/dependencies/AMReX.cmake
          Ccache | "$(System.JobName)" | .azure-pipelines.yml
       path: /home/vsts/.ccache
@@ -63,9 +66,8 @@ jobs:
   - task: Cache@2
     continueOnError: true
     inputs:
-      key: 'Python3 | "$(System.JobName)" | .azure-pipelines.yml | run_test.sh'
+      key: 'Python3 | "$(System.JobName)" | .azure-pipelines.yml'
       restoreKeys: |
-         Python3 | "$(System.JobName)" | .azure-pipelines.yml | run_test.sh
          Python3 | "$(System.JobName)" | .azure-pipelines.yml
       path: /home/vsts/.local/lib/python3.8
       cacheHitVar: PYTHON38_CACHE_RESTORED
@@ -83,6 +85,8 @@ jobs:
         python3 python3-pandas python3-pip python3-venv python3-setuptools libblas-dev liblapack-dev
       ccache --set-config=max_size=10.0G
       python3 -m pip install --upgrade pip
+      python3 -m pip install --upgrade build
+      python3 -m pip install --upgrade packaging
       python3 -m pip install --upgrade setuptools
       python3 -m pip install --upgrade wheel
       python3 -m pip install --upgrade virtualenv
@@ -92,25 +96,29 @@ jobs:
       export PATH="$HOME/.local/bin:$PATH"
       sudo curl -L -o /usr/local/bin/cmake-easyinstall https://raw.githubusercontent.com/ax3l/cmake-easyinstall/main/cmake-easyinstall
       sudo chmod a+x /usr/local/bin/cmake-easyinstall
-      if [ "${WARPX_CI_OPENPMD:-FALSE}" == "TRUE" ]; then
-        cmake-easyinstall --prefix=/usr/local                   \
-          git+https://github.com/openPMD/[email protected] \
-          -DCMAKE_CXX_COMPILER_LAUNCHER=$(which ccache)         \
-          -DCMAKE_VERBOSE_MAKEFILE=ON                           \
-          -DopenPMD_USE_PYTHON=OFF -DBUILD_TESTING=OFF -DBUILD_EXAMPLES=OFF -DBUILD_CLI_TOOLS=OFF
-        python3 -m pip install --upgrade openpmd-api
-      fi
-      if [[ "${WARPX_CI_RZ_OR_NOMPI:-FALSE}" == "TRUE" ]]; then
-        cmake-easyinstall --prefix=/usr/local git+https://github.com/icl-utk-edu/blaspp.git \
+      #if [ "${WARPX_OPENPMD:-FALSE}" == "TRUE" ]; then
+      #  cmake-easyinstall --prefix=/usr/local                   \
+      #    git+https://github.com/openPMD/[email protected] \
+      #    -DCMAKE_CXX_COMPILER_LAUNCHER=$(which ccache)         \
+      #    -DCMAKE_VERBOSE_MAKEFILE=ON                           \
+      #    -DopenPMD_USE_PYTHON=OFF -DBUILD_TESTING=OFF -DBUILD_EXAMPLES=OFF -DBUILD_CLI_TOOLS=OFF
+      #  #python3 -m pip install --upgrade openpmd-api
+      #fi
+      if [ "${WARPX_RZ_FFT:-FALSE}" == "TRUE" ]; then
+        # BLAS++
+        cmake-easyinstall --prefix=/usr/local           \
+          git+https://github.com/icl-utk-edu/blaspp.git \
           -DCMAKE_CXX_COMPILER_LAUNCHER=$(which ccache) \
           -DCMAKE_CXX_STANDARD=17                       \
           -Duse_openmp=OFF -Dbuild_tests=OFF -DCMAKE_VERBOSE_MAKEFILE=ON
-        cmake-easyinstall --prefix=/usr/local git+https://github.com/icl-utk-edu/lapackpp.git \
-          -DCMAKE_CXX_COMPILER_LAUNCHER=$(which ccache) \
-          -DCMAKE_CXX_STANDARD=17                       \
+        # LAPACK++
+        cmake-easyinstall --prefix=/usr/local             \
+          git+https://github.com/icl-utk-edu/lapackpp.git \
+          -DCMAKE_CXX_COMPILER_LAUNCHER=$(which ccache)   \
+          -DCMAKE_CXX_STANDARD=17                         \
           -Duse_cmake_find_lapack=ON -Dbuild_tests=OFF -DCMAKE_VERBOSE_MAKEFILE=ON
       fi
-      if [[ "${WARPX_CI_REGULAR_CARTESIAN_3D:-FALSE}" == "TRUE" ]]; then
+      if [ "${WARPX_HEFFTE:-FALSE}" == "TRUE" ]; then
         cmake-easyinstall --prefix=/usr/local git+https://github.com/icl-utk-edu/[email protected] \
           -DCMAKE_CXX_COMPILER_LAUNCHER=$(which ccache)          \
           -DCMAKE_CXX_STANDARD=17 -DHeffte_ENABLE_DOXYGEN=OFF    \
@@ -121,14 +129,36 @@ jobs:
           -DHeffte_ENABLE_MAGMA=OFF                              \
           -DCMAKE_VERBOSE_MAKEFILE=ON
       fi
+      # Python modules required for test analysis
+      python3 -m pip install --upgrade -r Regression/requirements.txt
+      python3 -m pip cache purge
+      # external repositories required for test analysis
+      cd ..
+      git clone --depth 1 https://github.com/ECP-WarpX/warpx-data.git
+      # TODO select only specific datasets?
+      git clone --depth 1 https://github.com/openPMD/openPMD-example-datasets.git
+      cd -
       rm -rf ${CEI_TMP}
       df -h
     displayName: 'Install dependencies'
 
   - bash: |
       set -eu -o pipefail
       df -h
-      ./run_test.sh
-      rm -rf ${WARPX_CI_TMP}
+      # configure
+      export AMReX_CMAKE_FLAGS="-DAMReX_ASSERTIONS=ON -DAMReX_TESTING=ON"
+      # FIXME update after https://github.com/AMReX-Codes/amrex/pull/4126
+      cmake -S . -B build       \
+        ${AMReX_CMAKE_FLAGS}    \
+        ${WARPX_CMAKE_FLAGS}    \
+        -DWarpX_amrex_repo=https://github.com/ax3l/amrex.git \
+        -DWarpX_amrex_branch=topic-pp-prefix                 \
+        -DWarpX_TEST_CLEANUP=ON \
+        -DWarpX_TEST_FPETRAP=ON
+      # build
+      cmake --build build -j 2
+      # run tests (exclude pytest.AMReX when running Python tests)
+      ctest --test-dir build --output-on-failure -E AMReX
+      rm -rf build
       df -h
     displayName: 'Build & test'

.github/workflows/clang_sanitizers.yml

@@ -68,10 +68,10 @@ jobs:
         #MPI implementations often leak memory
         export "ASAN_OPTIONS=detect_leaks=0"
 
-        mpirun -n 2 ./build/bin/warpx.rz Examples/Physics_applications/laser_acceleration/inputs_rz
-        mpirun -n 2 ./build/bin/warpx.1d Examples/Physics_applications/laser_acceleration/inputs_1d
-        mpirun -n 2 ./build/bin/warpx.2d Examples/Physics_applications/laser_acceleration/inputs_2d
-        mpirun -n 2 ./build/bin/warpx.3d Examples/Physics_applications/laser_acceleration/inputs_3d
+        mpirun -n 2 ./build/bin/warpx.rz Examples/Physics_applications/laser_acceleration/inputs_base_rz
+        mpirun -n 2 ./build/bin/warpx.1d Examples/Physics_applications/laser_acceleration/inputs_test_1d_laser_acceleration
+        mpirun -n 2 ./build/bin/warpx.2d Examples/Physics_applications/laser_acceleration/inputs_base_2d
+        mpirun -n 2 ./build/bin/warpx.3d Examples/Physics_applications/laser_acceleration/inputs_base_3d
 
   build_thread_sanitizer:
     name: Clang thread sanitizer
@@ -149,14 +149,14 @@ jobs:
 
         export OMP_NUM_THREADS=2
 
-        mpirun -n 2 ./build/bin/warpx.rz Examples/Physics_applications/laser_acceleration/inputs_rz warpx.serialize_initial_conditions = 0
-        mpirun -n 2 ./build/bin/warpx.1d Examples/Physics_applications/laser_acceleration/inputs_1d warpx.serialize_initial_conditions = 0
-        mpirun -n 2 ./build/bin/warpx.2d Examples/Physics_applications/laser_acceleration/inputs_2d warpx.serialize_initial_conditions = 0
-        mpirun -n 2 ./build/bin/warpx.3d Examples/Physics_applications/laser_acceleration/inputs_3d warpx.serialize_initial_conditions = 0
+        mpirun -n 2 ./build/bin/warpx.rz Examples/Physics_applications/laser_acceleration/inputs_base_rz warpx.serialize_initial_conditions = 0
+        mpirun -n 2 ./build/bin/warpx.1d Examples/Physics_applications/laser_acceleration/inputs_test_1d_laser_acceleration warpx.serialize_initial_conditions = 0
+        mpirun -n 2 ./build/bin/warpx.2d Examples/Physics_applications/laser_acceleration/inputs_base_2d warpx.serialize_initial_conditions = 0
+        mpirun -n 2 ./build/bin/warpx.3d Examples/Physics_applications/laser_acceleration/inputs_base_3d warpx.serialize_initial_conditions = 0
 
         git clone https://github.com/ECP-WarpX/warpx-data ../warpx-data
         cd Examples/Tests/embedded_circle
 
         ulimit -c unlimited
 
-        mpirun -n 2 ../../../build_EB/bin/warpx.2d inputs_2d warpx.serialize_initial_conditions = 0
+        mpirun -n 2 ../../../build_EB/bin/warpx.2d inputs_test_2d_embedded_circle warpx.serialize_initial_conditions = 0

.github/workflows/insitu.yml

@@ -58,10 +58,10 @@ jobs:
         cmake --build build -j 4
     - name: Test
       run: |
-        cp Examples/Physics_applications/laser_acceleration/inputs_3d .
+        cp Examples/Physics_applications/laser_acceleration/inputs_base_3d .
         cp Examples/Physics_applications/laser_acceleration/3d_ascent_actions.yaml ascent_actions.yaml
         mpiexec -n 2 ./build/bin/warpx.3d \
-          inputs_3d                    \
+            inputs_base_3d             \
             max_step = 40              \
             diag1.intervals = 30:40:10 \
             diag1.format = ascent
@@ -101,26 +101,26 @@ jobs:
         cmake --build build -j 10
     - name: 2D Test
       run: |
-        cp Examples/Tests/ionization/inputs_2d_rt .
+        cp Examples/Tests/ionization/inputs_test_2d_ionization_lab .
         cp Examples/Tests/ionization/catalyst_pipeline.py .
         mpiexec -n 2 ./build/bin/warpx.2d \
-          inputs_2d_rt \
+            inputs_test_2d_ionization_lab \
             catalyst.script_paths = catalyst_pipeline.py\
             catalyst.implementation = paraview\
             diag1.intervals = 16\
             diag1.species = "electrons ions"\
             diag1.format = catalyst
     - name: 3D Test
       run: |
-        cp Examples/Tests/electrostatic_sphere/inputs_3d .
+        cp Examples/Tests/electrostatic_sphere/inputs_base_3d .
         cp Examples/Tests/electrostatic_sphere/catalyst_pipeline.py .
         mpiexec -n 2 ./build/bin/warpx.3d \
-          inputs_3d \
-          catalyst.script_paths = catalyst_pipeline.py \
-          catalyst.implementation = paraview \
-          diagnostics.diags_names = diag1 \
-          diag1.format = catalyst\
-          diag1.intervals = 3
+            inputs_base_3d \
+            catalyst.script_paths = catalyst_pipeline.py \
+            catalyst.implementation = paraview \
+            diagnostics.diags_names = diag1 \
+            diag1.format = catalyst\
+            diag1.intervals = 3
     - uses: actions/upload-artifact@v4
       with:
         name: catalyst-test-artifacts

.github/workflows/intel.yml

@@ -132,7 +132,7 @@ jobs:
         source /opt/intel/oneapi/setvars.sh
         set -e
         export OMP_NUM_THREADS=2
-        Examples/Physics_applications/laser_acceleration/PICMI_inputs_3d.py
+        Examples/Physics_applications/laser_acceleration/inputs_test_3d_laser_acceleration_picmi.py
 
   build_dpcc:
     name: oneAPI DPC++ SP

.github/workflows/macos.yml

@@ -84,4 +84,4 @@ jobs:
         source py-venv/bin/activate
         export OMP_NUM_THREADS=1
 
-        mpirun -n 2 Examples/Physics_applications/laser_acceleration/PICMI_inputs_3d.py
+        mpirun -n 2 Examples/Physics_applications/laser_acceleration/inputs_test_3d_laser_acceleration_picmi.py

.github/workflows/scripts/checkQEDTableGenerator.sh

@@ -29,7 +29,7 @@ export OMP_NUM_THREADS=2
 # Generate QED lookup tables using WarpX
 #
 ./build/bin/warpx.2d \
-    ./Examples/Tests/qed/quantum_synchrotron/inputs_2d \
+    ./Examples/Tests/qed/inputs_test_2d_qed_quantum_sync \
     qed_bw.lookup_table_mode = "generate" \
     qed_bw.tab_dndt_chi_min = 0.01 \
     qed_bw.tab_dndt_chi_max = 100.0 \
@@ -70,7 +70,7 @@ diff qs_table_dndt qs_table_tool_dndt
 # Run a WarpX simulation using the lookup tables generated by the external tool
 #
 ./build/bin/warpx.2d \
-    ./Examples/Tests/qed/quantum_synchrotron/inputs_2d \
+    ./Examples/Tests/qed/inputs_test_2d_qed_quantum_sync \
     qed_bw.lookup_table_mode = "load" \
     qed_bw.load_table_from = "bw_table_tool" \
     qed_qs.lookup_table_mode = "load" \

.github/workflows/source.yml

@@ -25,10 +25,8 @@ jobs:
       run: .github/workflows/source/hasTabs
     - name: End-of-Line whitespaces
       run: .github/workflows/source/hasEOLwhiteSpace
-    - name: Proper file names in Examples
-      run: .github/workflows/source/wrongFileNameInExamples
-    - name: Examples are tested
-      run: .github/workflows/source/inputsNotTested
+    - name: Check test input files
+      run: .github/workflows/source/check_inputs.py
     - name: Check that the test matrix for CI includes all tests
       run: .github/workflows/source/test_ci_matrix.sh
     - name: Doxygen