Skip to content

Commit

Permalink
Review: emphasis on not including header lines
Browse files Browse the repository at this point in the history
  • Loading branch information
tskir committed Jan 29, 2020
1 parent 0757c5a commit 47056aa
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion docs/manual-curation.md
Original file line number Diff line number Diff line change
Expand Up @@ -88,7 +88,7 @@ The “Status” column has the following acceptable values:
Sometimes, especially when copy-pasting information from external sources, a mapping label or URL can contain an additional space symbol (at the beginning or end) or an accidental line break. This causes problems in the downstream processing and must be manually removed. To minimise the occurences of this, Google Sheets template includes a validation formula for the first two columns (“URI of selected mapping” and “Label of selected mapping”). If it detects an extra space symbol or a line break, the cell will be highlighted in red.

## Exporting curation results
Once the manual curation is completed, apply a spreadsheet filter so that only traits with Status = DONE are visible. Copy data for all non-empty rows from three columns: “ClinVar label”; “URI of selected mapping”; “Label of selected mapping”, in that order. Do not include header lines. Save the data to a file `${BATCH_ROOT}/trait_mapping/finished_mappings_curation.tsv`.
Once the manual curation is completed, apply a spreadsheet filter so that only traits with Status = DONE are visible. Copy data for all non-empty rows from three columns: “ClinVar label”; “URI of selected mapping”; “Label of selected mapping”, in that order. **Do not include header lines.** Save the data to a file `${BATCH_ROOT}/trait_mapping/finished_mappings_curation.tsv`.

Concatenate automated and manual mappings into a single file:
```bash
Expand Down

0 comments on commit 47056aa

Please sign in to comment.