Merge pull request #2185 from EBISPOT/import_OBA_term_PSA-amount

imported OBA term_PSA amount
EBISPOT · Feb 22, 2024 · 85a86b4 · 85a86b4
2 parents e9cc77e + ba64412
commit 85a86b4
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diff --git a/src/ontology/imports/oba_import.owl b/src/ontology/imports/oba_import.owl
@@ -8520,23 +8520,8 @@ A continuant cannot be part of an occurrent: use &apos;participates in&apos;. An
     <!-- http://purl.obolibrary.org/obo/OBA_2040412 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBA_2040412">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBA_2050200"/>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0000070"/>
-        <rdfs:subClassOf>
-            <owl:Restriction>
-                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
-                <owl:someValuesFrom>
-                    <owl:Class>
-                        <owl:intersectionOf rdf:parseType="Collection">
-                            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/PR_000003015"/>
-                            <owl:Restriction>
-                                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
-                                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001062"/>
-                            </owl:Restriction>
-                        </owl:intersectionOf>
-                    </owl:Class>
-                </owl:someValuesFrom>
-            </owl:Restriction>
-        </rdfs:subClassOf>
         <obo:IAO_0000115>The amount of a prostate-specific antigen when measured in blood serum.</obo:IAO_0000115>
         <terms:contributor>https://orcid.org/0000-0001-8314-2140</terms:contributor>
         <oboInOwl:hasExactSynonym>blood serum prostate-specific antigen amount</oboInOwl:hasExactSynonym>
@@ -11320,14 +11305,14 @@ A continuant cannot be part of an occurrent: use &apos;participates in&apos;. An
     </owl:Class>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/OBA_2040527"/>
-        <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
-        <owl:annotatedTarget>blood serum adenylosuccinate synthetase isozyme 1 amount</owl:annotatedTarget>
+        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+        <owl:annotatedTarget>The amount of a adenylosuccinate synthetase isozyme 1 when measured in blood serum.</owl:annotatedTarget>
         <oboInOwl:hasDbXref>AUTO:patterns/patterns/entity_attribute_location</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/OBA_2040527"/>
-        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
-        <owl:annotatedTarget>The amount of a adenylosuccinate synthetase isozyme 1 when measured in blood serum.</owl:annotatedTarget>
+        <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
+        <owl:annotatedTarget>blood serum adenylosuccinate synthetase isozyme 1 amount</owl:annotatedTarget>
         <oboInOwl:hasDbXref>AUTO:patterns/patterns/entity_attribute_location</oboInOwl:hasDbXref>
     </owl:Axiom>
 
@@ -119070,14 +119055,14 @@ A continuant cannot be part of an occurrent: use &apos;participates in&apos;. An
     </owl:Class>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/OBA_2045085"/>
-        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
-        <owl:annotatedTarget>The amount of a PC(17:0_18:1) when measured in blood serum.</owl:annotatedTarget>
+        <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
+        <owl:annotatedTarget>blood serum PC(17:0_18:1) amount</owl:annotatedTarget>
         <oboInOwl:hasDbXref>AUTO:patterns/patterns/entity_attribute_location</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/OBA_2045085"/>
-        <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
-        <owl:annotatedTarget>blood serum PC(17:0_18:1) amount</owl:annotatedTarget>
+        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+        <owl:annotatedTarget>The amount of a PC(17:0_18:1) when measured in blood serum.</owl:annotatedTarget>
         <oboInOwl:hasDbXref>AUTO:patterns/patterns/entity_attribute_location</oboInOwl:hasDbXref>
     </owl:Axiom>
 
@@ -122053,6 +122038,66 @@ A continuant cannot be part of an occurrent: use &apos;participates in&apos;. An
 
 
 
+    <!-- http://purl.obolibrary.org/obo/OBA_2050200 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBA_2050200">
+        <owl:equivalentClass>
+            <owl:Class>
+                <owl:intersectionOf rdf:parseType="Collection">
+                    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/PATO_0000070"/>
+                    <owl:Restriction>
+                        <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
+                        <owl:someValuesFrom>
+                            <owl:Class>
+                                <owl:intersectionOf rdf:parseType="Collection">
+                                    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/PR_000003015"/>
+                                    <owl:Restriction>
+                                        <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+                                        <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001062"/>
+                                    </owl:Restriction>
+                                </owl:intersectionOf>
+                            </owl:Class>
+                        </owl:someValuesFrom>
+                    </owl:Restriction>
+                </owl:intersectionOf>
+            </owl:Class>
+        </owl:equivalentClass>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0000070"/>
+        <rdfs:subClassOf>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
+                <owl:someValuesFrom>
+                    <owl:Class>
+                        <owl:intersectionOf rdf:parseType="Collection">
+                            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/PR_000003015"/>
+                            <owl:Restriction>
+                                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+                                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001062"/>
+                            </owl:Restriction>
+                        </owl:intersectionOf>
+                    </owl:Class>
+                </owl:someValuesFrom>
+            </owl:Restriction>
+        </rdfs:subClassOf>
+        <obo:IAO_0000115>The amount of a prostate-specific antigen when measured in anatomical entity.</obo:IAO_0000115>
+        <oboInOwl:hasExactSynonym>anatomical entity prostate-specific antigen amount</oboInOwl:hasExactSynonym>
+        <rdfs:label>prostate specific antigen amount</rdfs:label>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/OBA_2050200"/>
+        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+        <owl:annotatedTarget>The amount of a prostate-specific antigen when measured in anatomical entity.</owl:annotatedTarget>
+        <oboInOwl:hasDbXref>AUTO:patterns/patterns/entity_attribute_location</oboInOwl:hasDbXref>
+    </owl:Axiom>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/OBA_2050200"/>
+        <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
+        <owl:annotatedTarget>anatomical entity prostate-specific antigen amount</owl:annotatedTarget>
+        <oboInOwl:hasDbXref>AUTO:patterns/patterns/entity_attribute_location</oboInOwl:hasDbXref>
+    </owl:Axiom>
+
+
+
     <!-- http://purl.obolibrary.org/obo/OBA_2050327 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBA_2050327">

diff --git a/src/ontology/imports/oba_terms.txt b/src/ontology/imports/oba_terms.txt
@@ -5083,6 +5083,7 @@ http://purl.obolibrary.org/obo/OBA_2045204
 http://purl.obolibrary.org/obo/OBA_2050073
 http://purl.obolibrary.org/obo/OBA_2050082
 http://purl.obolibrary.org/obo/OBA_2050099
+http://purl.obolibrary.org/obo/OBA_2050200
 http://purl.obolibrary.org/obo/OBA_2050327
 http://purl.obolibrary.org/obo/OBA_2050328
 http://purl.obolibrary.org/obo/OBA_2050329

diff --git a/src/ontology/iri_dependencies/oba_terms.txt b/src/ontology/iri_dependencies/oba_terms.txt
@@ -10094,3 +10094,5 @@ http://purl.obolibrary.org/obo/OBA_2050414
 http://purl.obolibrary.org/obo/OBA_2050415
 http://purl.obolibrary.org/obo/OBA_2050416
 http://purl.obolibrary.org/obo/OBA_2050417
+http://purl.obolibrary.org/obo/OBA_2050200
+http://purl.obolibrary.org/obo/PR_000003015