remove unused config options

EBISPOT · Jun 1, 2024 · 441fe6d · 441fe6d
1 parent 2c5541f
commit 441fe6d
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Showing 3 changed files with 2 additions and 79 deletions.
diff --git a/configs/pipeline_configs/ebi_full_monarch.json b/configs/pipeline_configs/ebi_full_monarch.json
@@ -1,31 +1,4 @@
 {
-    "slurm_max_workers": {
-        "ingest": 100,
-        "assign_ids": 100,
-        "extract": 100,
-        "materialise": 50,
-        "prepare_db_import": 300
-    },
-    "slurm_max_memory": {
-        "ingest": "32G",
-        "build_equiv_groups": "64G",
-        "assign_ids": "64G",
-        "merge": "16G",
-        "index": "64G",
-        "extract": "8G",
-        "materialise": "105G",
-        "prepare_db_import": "32G"
-    },
-    "slurm_max_time": {
-        "ingest": "8:0:0",
-        "build_equiv_groups": "23:0:0",
-        "assign_ids": "23:0:0",
-        "merge": "23:0:0",
-        "index": "23:0:0",
-        "extract": "23:0:0",
-        "materialise": "1:0:0",
-        "prepare_db_import": "1:0:0"
-    },
     "bytes_per_merged_file": 1073741824,
     "equivalence_props": [
         "owl:equivalentClass",

diff --git a/configs/pipeline_configs/ebi_test.json b/configs/pipeline_configs/ebi_test.json
@@ -1,27 +1,4 @@
 {
-    "slurm_max_workers": {
-        "ingest": 100,
-        "assign_ids": 100,
-        "extract": 100
-    },
-    "slurm_max_memory": {
-        "ingest": "32G",
-        "build_equiv_groups": "64G",
-        "assign_ids": "64G",
-        "merge": "16G",
-        "index": "64G",
-        "extract": "8G",
-        "prepare_db_import": "16G"
-    },
-    "slurm_max_time": {
-        "ingest": "8:0:0",
-        "build_equiv_groups": "23:0:0",
-        "assign_ids": "23:0:0",
-        "merge": "23:0:0",
-        "index": "23:0:0",
-        "extract": "23:0:0",
-        "prepare_db_import": "8:0:0"
-    },
     "bytes_per_merged_file": 1073741824,
     "equivalence_props": [
         "owl:equivalentClass",
@@ -44,4 +21,4 @@
     "datasource_configs": [
         "./configs/datasource_configs/ols.json"
     ]
-}
+}
diff --git a/configs/pipeline_configs/local_test.json b/configs/pipeline_configs/local_test.json
@@ -1,31 +1,4 @@
 {
-    "slurm_max_workers": {
-        "ingest": 100,
-        "assign_ids": 100,
-        "extract": 100,
-        "materialise": 50,
-        "prepare_db_import": 300
-    },
-    "slurm_max_memory": {
-        "ingest": "150G",
-        "build_equiv_groups": "64G",
-        "assign_ids": "64G",
-        "merge": "16G",
-        "index": "64G",
-        "extract": "8G",
-        "materialise": "105G",
-        "prepare_db_import": "32G"
-    },
-    "slurm_max_time": {
-        "ingest": "8:0:0",
-        "build_equiv_groups": "23:0:0",
-        "assign_ids": "23:0:0",
-        "merge": "23:0:0",
-        "index": "23:0:0",
-        "extract": "23:0:0",
-        "materialise": "1:0:0",
-        "prepare_db_import": "1:0:0"
-    },
     "bytes_per_merged_file": 173741824,
     "equivalence_props": [
         "owl:equivalentClass",
@@ -61,4 +34,4 @@
     "datasource_configs": [
         "./configs/datasource_configs/gwas.json"
     ]
-}
+}