add ic score to neo4j

EBISPOT · Nov 5, 2024 · 211d0ef · 211d0ef
1 parent 6023eef
commit 211d0ef
Showing 1 changed file with 12 additions and 0 deletions.
diff --git a/07_create_db/neo4j/create_indexes.cypher b/07_create_db/neo4j/create_indexes.cypher
@@ -7,3 +7,15 @@ CREATE INDEX id_id FOR (n:Id) ON n.`id`
 ;
 CALL db.awaitIndexes(10800)
 ;
+MATCH (ancestor:`ols:Class`)<-[:`biolink:broad_match`*1..]-(subclass:`ols:Class`)
+WITH ancestor, count(DISTINCT subclass) AS num_desc
+SET ancestor.num_desc = num_desc
+;
+WITH COLLECT { MATCH (cl:`ols:Class`) RETURN max(cl.num_desc) }[0] AS max_num_desc
+MATCH (cl2:`ols:Class`)
+SET cl2.ic = 1.0 - (cl2.num_desc/max_num_desc)
+;
+CREATE INDEX ic FOR (n:GraphNode) ON (n.ic)
+;
+CALL db.awaitIndexes(10800)
+;