Code

Prep for a new release#10

Code

Merged

mberacochea merged 18 commits intomasterEBI-Metagenomics/shallowmapping:masterfrom devEBI-Metagenomics/shallowmapping:devCopy head branch name to clipboardJan 6, 2025

+11,800-1,122

Commits

Commits on Sep 13, 2024

• Update databases_setup.sh

  Show description for b96679e
  Ales-ibt

  authored
  b96679e

Commits on Oct 21, 2024

• Update databases_setup.sh

  Ales-ibt

  authored
  7eadb9c

• Update README.md

  Ales-ibt

  authored
  be966eb

• Update nextflow_schema.json

  Ales-ibt

  authored
  6b6c0f0

Commits on Nov 6, 2024

• Fix a few linting issues

  mberacochea

  committed
  67f806c

Commits on Dec 17, 2024

• Change LICENSE to Apache, lint script and adjust dbs.sh script

  mberacochea

  committed
  6e54bcc

• Adjust nf-core.yml

  mberacochea

  committed
  b250809

• Merge pull request #8 from EBI-Metagenomics/update/dbs_download

  Show description for 26c2610
  mberacochea

  authored
  26c2610

Commits on Dec 18, 2024

• Refactor the pipeline and download dbs code.

  Show description for d45a5f1
  mberacochea

  committed
  d45a5f1

• Fix lint issue

  mberacochea

  committed
  c25db16

• Fix the catalogues URLs

  mberacochea

  committed
  2a338d1

• Fix DRAM distill and re-enable the tests.

  mberacochea

  committed
  522389d

• Change the test reads urls to the github ones

  mberacochea

  committed
  992df76

Commits on Dec 19, 2024

• Fix the download sbfw and adjust the test profile reads

  mberacochea

  committed
  cd24908

• Adjust the test samplesheet path

  mberacochea

  committed
  42ccd95

• Adjust based on suggestions

  mberacochea

  committed
  3b4a3cb

Commits on Dec 20, 2024

• Merge pull request #9 from EBI-Metagenomics/update/dbs_download

  Show description for 72ccfb8
  mberacochea

  authored
  72ccfb8

• Update the test samplesheet reads URL

  mberacochea

  committed
  a25c08f