Fixing failed lint

EBI-Metagenomics · Apr 11, 2024 · 89acf4d · 89acf4d
1 parent a5b8c7f
commit 89acf4d
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diff --git a/.nf-core.yml b/.nf-core.yml
@@ -12,8 +12,6 @@ lint:
   files_unchanged:
   - CODE_OF_CONDUCT.md
   - assets/nf-core-shallowmapping_logo_light.png
-  - docs/images/nf-core-shallowmapping_logo_light.png
-  - docs/images/nf-core-shallowmapping_logo_dark.png
   - .github/ISSUE_TEMPLATE/bug_report.yml
   multiqc_config:
   - report_comment

diff --git a/assets/methods_description_template.yml b/assets/methods_description_template.yml
@@ -3,7 +3,6 @@ description: "Suggested text and references to use when describing pipeline usag
 section_name: "ebi-metagenomics/shallowmapping Methods Description"
 section_href: "https://github.com/ebi-metagenomics/shallowmapping"
 plot_type: "html"
-## TODO nf-core: Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline
 ## You inject any metadata in the Nextflow '${workflow}' object
 data: |
   <h4>Methods</h4>

diff --git a/conf/test.config b/conf/test.config
diff --git a/conf/test_full.config b/conf/test_full.config
diff --git a/docs/README.md b/docs/README.md
diff --git a/docs/images/mqc_fastqc_adapter.png b/docs/images/mqc_fastqc_adapter.png
diff --git a/docs/images/mqc_fastqc_counts.png b/docs/images/mqc_fastqc_counts.png
diff --git a/docs/images/mqc_fastqc_quality.png b/docs/images/mqc_fastqc_quality.png
diff --git a/docs/images/workflow.png b/docs/images/workflow.png
diff --git a/docs/output.md b/docs/output.md
diff --git a/docs/usage.md b/docs/usage.md