Refactor workflows & pyproject for hatch deploy 🚀

- Updated `release-snap.yml` and `test-snap.yml` to use `uv` for installation
and deployment.
- Modified `release-snap.yml` to include environment setup and permissions.
- Converted `pyproject.toml` to utilize `hatch`, replacing `poetry` with
`hatchling` as the build system.
- Updated dependencies and moved them to the new `dependencies` and
`dependency-groups` format.

.github/workflows/release-snap.yml

@@ -13,14 +13,27 @@ jobs:
   release:
     runs-on: ubuntu-latest
 
+    environment:
+      name: pypi
+      url: https://pypi.org/p/deciphon-snap
+
+    permissions:
+      id-token: write
+
     steps:
       - uses: actions/checkout@v4
 
-      - name: Build
-        run: pipx run build
+      - name: Install uv
+        uses: astral-sh/setup-uv@v5
+
+      - name: Deploy
+        run: |
+          uv sync --all-extras --dev
+          uv build
+          uv publish
 
       - uses: pypa/gh-action-pypi-publish@release/v1
         with:
-          password: ${{secrets.PYPI_API_TOKEN}}
           packages-dir: snap/dist
           skip-existing: true
+          verbose: true

.github/workflows/test-snap.yml

@@ -22,7 +22,10 @@ jobs:
     steps:
       - uses: actions/checkout@v4
 
+      - name: Install uv
+        uses: astral-sh/setup-uv@v5
+
       - name: Run tests
         run: |
-          pipx run poetry install
-          pipx run poetry run pytest
+          uv sync --all-extras --dev
+          uv run pytest

snap/pyproject.toml

@@ -1,25 +1,30 @@
-[tool.poetry]
+[project]
 name = "deciphon-snap"
 version = "1.0.3"
 description = "Reader for Deciphon snap files."
-authors = ["Danilo Horta <[email protected]>"]
-license = "MIT"
+authors = [{ name = "Danilo Horta", email = "[email protected]" }]
+requires-python = "~=3.9"
 readme = "README.md"
-packages = [{ include = "deciphon_snap" }]
+license = "MIT"
+dependencies = [
+    "fsspec>=2024.9.0",
+    "h3result>=1.0.1,<2",
+    "fasta-reader>=3.0.3,<4",
+    "deciphon-intervals>=1.0.0,<2",
+    "prettytable~=3.11",
+    "pydantic~=2.9",
+    "hmmer-tables>=1.0.1,<2",
+]
+
+[dependency-groups]
+dev = ["pytest~=8.2"]
 
-[tool.poetry.dependencies]
-python = "^3.9"
-fsspec = ">=2024.9.0"
-h3result = "^1.0.1"
-fasta-reader = "^3.0.3"
-deciphon-intervals = "^1.0.0"
-prettytable = "^3.11"
-pydantic = "^2.9"
-hmmer-tables = "^1.0.1"
+[tool.hatch.build.targets.sdist]
+include = ["deciphon_snap"]
 
-[tool.poetry.group.dev.dependencies]
-pytest = "^8.2"
+[tool.hatch.build.targets.wheel]
+include = ["deciphon_snap"]
 
 [build-system]
-requires = ["poetry-core"]
-build-backend = "poetry.core.masonry.api"
+requires = ["hatchling"]
+build-backend = "hatchling.build"