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Submodule base
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@DonovanMaillard
DonovanMaillard authored Mar 20, 2022
1 parent 7c9a75b commit f942c4c
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13 changes: 13 additions & 0 deletions config.json
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{
"tree": {
"module": {
"sites_group": {
"site": {
"visit": {
"observation": null
}
}
}
}
}
}
362 changes: 362 additions & 0 deletions exports/csv/export_csv.sql
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alter table gn_monitoring.t_base_sites alter column id_nomenclature_type_site drop not null;

-------------------------------------------------final --POPAmphibien standard------------------------------------------
-- View: gn_monitoring.v_export_popamphibien_standard

DROP VIEW IF EXISTS gn_monitoring.v_export_popamphibien_standard;

CREATE OR REPLACE VIEW gn_monitoring.v_export_popamphibien_standard
AS

SELECT
aire.id_dataset::text,
aire.id_sites_group as id_aire,
aire.nom_aire,
aire.commune,
aire.categories_paysageres,
ovs.id as id_site,
ovs.base_site_code AS numero_site,
ovs.coordonnee_x as coordonnee_x_lamb93,
ovs.coordonnee_y as coordonnee_y_lamb93,
ovs.milieu_aquatique,
ovs.turbidite,
ovs.variation_eau,
ovs.courant,
ovs.vegetation_aquatique_principale,
ovs.rives,
ovs.habitat_terrestre_environnant,
ovs.activite_humaine,
ovs.site_protege,
ovs.id_base_visit AS numero_passage,
ovs.visit_date_min as date_passage,
ovs.temperature_air,
ovs.temperature_eau,
ovs.ensoleillement,
ovs.vent,
ovs.pluviosite,
ovs.methode_de_prospection,
ovs.espece,
ovs.stade,
ovs.nombre_compte,
ovs.nombre_estime
FROM ( SELECT s.id_sites_group,
s.id_base_site as id,
s.base_site_code,
s.coordonnee_x,
s.coordonnee_y,
s.milieu_aquatique,
s.turbidite,
s.variation_eau,
s.courant,
s.vegetation_aquatique_principale,
s.rives,
s.habitat_terrestre_environnant,
s.activite_humaine,
s.site_protege,
ov.id_base_site,
ov.id_base_visit,
ov.visit_date_min,
ov.temperature_air,
ov.temperature_eau,
ov.ensoleillement,
ov.vent,
ov.pluviosite,
ov.methode_de_prospection,
ov.id_observation,
ov.id_base_visit_o,
ov.stade,
ov.nombre_compte,
ov.nombre_estime,
ov.espece
FROM ( SELECT v.id_base_site,
v.id_base_visit,
v.visit_date_min,
v.temperature_air,
v.temperature_eau,
v.ensoleillement,
v.vent,
v.pluviosite,
v.methode_de_prospection,
o.id_observation,
o.id_base_visit_o,
o.stade,
o.nombre_compte,
o.nombre_estime,
o.espece
FROM ( SELECT obs.id_observation,
obs.id_base_visit AS id_base_visit_o,
n.label_fr AS stade,
obs.nombre_compte,
n1.label_fr as nombre_estime,
taxon.lb_nom AS espece
FROM ( SELECT ob.id_observation,
ob.id_base_visit,
ob.cd_nom,
ob.comments,
ob.uuid_observation,
oc.data -> 'nombre_compte'::text AS nombre_compte,
oc.data -> 'nombre_estime'::text AS ne,
oc.data -> 'id_nomenclature_stade'::text AS st
FROM gn_monitoring.t_observations ob
LEFT JOIN gn_monitoring.t_observation_complements oc ON ob.id_observation = oc.id_observation) obs
LEFT JOIN taxonomie.taxref taxon ON obs.cd_nom = taxon.cd_nom
LEFT JOIN ref_nomenclatures.t_nomenclatures n ON obs.st::character varying::text = n.id_nomenclature::character varying::text
LEFT JOIN ref_nomenclatures.t_nomenclatures n1 ON obs.ne::character varying::text = n1.id_nomenclature::character varying::text) o
LEFT JOIN ( SELECT
visit.id_base_site,
visit.id_base_visit,
visit.visit_date_min,
visit.ta AS temperature_air,
visit.te AS temperature_eau,
n3.label_fr AS ensoleillement,
n4.label_fr AS vent,
n5.label_fr AS pluviosite,
n6.label_fr AS methode_de_prospection
FROM ( SELECT vb.id_base_site,
vb.id_base_visit,
vb.visit_date_min,
vc.data -> 'temperature_air'::text AS ta,
vc.data -> 'temperature_eau'::text AS te,
vc.data -> 'ensoleillement'::text AS en,
vc.data -> 'vent'::text AS vent,
vc.data -> 'pluviosite'::text AS pl,
vc.data -> 'methode_de_prospection'::text AS mp
FROM gn_monitoring.t_base_visits vb
LEFT JOIN gn_monitoring.t_visit_complements vc ON vb.id_base_visit = vc.id_base_visit) visit
LEFT JOIN ref_nomenclatures.t_nomenclatures n3 ON visit.en::character varying::text = n3.id_nomenclature::character varying::text
LEFT JOIN ref_nomenclatures.t_nomenclatures n4 ON visit.vent::character varying::text = n4.id_nomenclature::character varying::text
LEFT JOIN ref_nomenclatures.t_nomenclatures n5 ON visit.pl::character varying::text = n5.id_nomenclature::character varying::text
LEFT JOIN ref_nomenclatures.t_nomenclatures n6 ON visit.mp::character varying::text = n6.id_nomenclature::character varying::text) v ON o.id_base_visit_o = v.id_base_visit) ov
INNER JOIN ( SELECT
site.id_sites_group,
site.id_base_site,
site.base_site_code,
st_x(ST_Centroid(site.geom)) AS coordonnee_x,
st_y(ST_Centroid(site.geom))AS coordonnee_y,
n1.label_fr AS milieu_aquatique,
n2.label_fr AS turbidite,
n3.label_fr AS variation_eau,
n4.label_fr AS courant,
n5.label_fr AS vegetation_aquatique_principale,
n6.label_fr AS rives,
n7.label_fr AS habitat_terrestre_environnant,
n8.label_fr AS activite_humaine,
n9.label_fr AS site_protege
FROM ( SELECT sc.data -> 'milieu_aquatique'::text AS ma,
sc.data -> 'turbidite'::text AS turb,
sc.data -> 'variation_eau'::text AS ve,
sc.data -> 'courant'::text AS courant,
sc.data -> 'vegetation_aquatique_principale'::text AS vap,
sc.data -> 'rives'::text AS riv,
sc.data -> 'habitat_terrestre_environnant'::text AS hab_ter,
sc.data -> 'activite_humaine'::text AS actv,
sc.data -> 'site_protege_oui'::text AS sp,
sc.id_module,
sb.id_base_site,
sb.id_inventor,
sb.id_digitiser,
sb.id_nomenclature_type_site,
sb.base_site_name,
sb.base_site_description,
sb.base_site_code,
sb.first_use_date,
sb.geom,
sb.geom_local,
sb.altitude_min,
sb.altitude_max,
sb.uuid_base_site,
sb.meta_create_date,
sb.meta_update_date,
sc.id_sites_group
FROM gn_monitoring.t_base_sites sb
LEFT JOIN gn_monitoring.t_site_complements sc ON sb.id_base_site = sc.id_base_site) site
INNER JOIN (select id_module, module_code from gn_commons.t_modules WHERE lower(module_code)='popamphibien') m ON site.id_module::character varying::text = m.id_module::character varying::text
LEFT JOIN ref_nomenclatures.t_nomenclatures n1 ON site.ma::character varying::text = n1.id_nomenclature::character varying::text
LEFT JOIN ref_nomenclatures.t_nomenclatures n2 ON site.turb::character varying::text = n2.id_nomenclature::character varying::text
LEFT JOIN ref_nomenclatures.t_nomenclatures n3 ON site.ve::character varying::text = n3.id_nomenclature::character varying::text
LEFT JOIN ref_nomenclatures.t_nomenclatures n4 ON site.courant::character varying::text = n4.id_nomenclature::character varying::text
LEFT JOIN ref_nomenclatures.t_nomenclatures n5 ON site.vap::character varying::text = n5.id_nomenclature::character varying::text
LEFT JOIN ref_nomenclatures.t_nomenclatures n6 ON site.riv::character varying::text = n6.id_nomenclature::character varying::text
LEFT JOIN ref_nomenclatures.t_nomenclatures n7 ON site.hab_ter::character varying::text = n7.id_nomenclature::character varying::text
LEFT JOIN ref_nomenclatures.t_nomenclatures n8 ON site.actv::character varying::text = n8.id_nomenclature::character varying::text
LEFT JOIN ref_nomenclatures.t_nomenclatures n9 ON site.sp::character varying::text = n9.id_nomenclature::character varying::text) s ON s.id_base_site = ov.id_base_site) ovs

LEFT JOIN ( SELECT
a.id_dataset,
a.id_sites_group,
a.sites_group_name AS nom_aire,
c.nom_com AS commune,
n.label_fr AS categories_paysageres
FROM ( SELECT t_sites_groups.id_sites_group,
t_sites_groups.sites_group_name,
(t_sites_groups.data -> 'commune'::text) ->> 0 AS commune,
t_sites_groups.data -> 'categories_paysageres'::text AS cp,
t_sites_groups.data -> 'id_dataset'::text AS id_dataset
FROM gn_monitoring.t_sites_groups ) a
LEFT JOIN ref_nomenclatures.t_nomenclatures n ON a.cp::text = n.id_nomenclature::text
LEFT JOIN ref_geo.li_municipalities c ON a.commune::character varying::text = c.insee_com::text) aire ON aire.id_sites_group = ovs.id_sites_group;








------------------------------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------------------------------
-- VERSION 17/02/2021
------------------------------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------------------------------

-- View: gn_monitoring.v_export_popamphibien_analyses

DROP VIEW IF EXISTS gn_monitoring.v_export_popamphibien_analyses;

CREATE OR REPLACE VIEW gn_monitoring.v_export_popamphibien_analyses
AS

SELECT
aire.id_dataset::text,
aire.id_sites_group as id_aire,
aire.nom_aire,
aire.commune,
aire.categories_paysageres,
ovs.id as id_site,
ovs.base_site_name AS nom_site,
ovs.coordonnee_x as coordonnee_x_lamb93,
ovs.coordonnee_y as coordonnee_y_lamb93,
ovs.milieu_aquatique,
ovs.num_passage AS numero_passage,
ovs.visit_date_min as date_passage,
ovs.presence_poisson::text,
ovs.espece ,
--case when ovs.observe is not null then ovs.observe else 0 end as observe,
ovs.stade,
ovs.comments as remarques


FROM ( SELECT
s.id_sites_group,
s.id_base_site as id,
s.base_site_name,
s.coordonnee_x,
s.coordonnee_y,
s.milieu_aquatique,
ov.id_base_site,
ov.id_base_visit,
ov.visit_date_min,
ov.presence_poisson,
ov.id_observation,
ov.id_base_visit_o,
ov.stade,
ov.espece ,
--ov.observe,
ov.comments,
ov.num_passage
--ov.espece_p

FROM ( SELECT

v.id_base_site,
v.id_base_visit,
v.visit_date_min,
v.presence_poisson,
o.id_observation,
o.id_base_visit_o,
o.espece,
--o.observe,
o.stade,
o.comments,
v.num_passage
--v.espece_p


FROM (
SELECT obs.id_observation,
obs.id_base_visit AS id_base_visit_o,
n.label_fr AS stade,
replace(obs.sexe::text,'"','') as sexe,
taxon.lb_nom AS espece,
obs.comments
FROM (
SELECT ob.id_observation,
ob.id_base_visit,
ob.cd_nom,
ob.comments,
ob.uuid_observation,
oc.data -> 'id_nomenclature_stade'::text AS st,
oc.data -> 'sexe'::text AS sexe
FROM gn_monitoring.t_observations ob
LEFT JOIN gn_monitoring.t_observation_complements oc ON ob.id_observation = oc.id_observation) obs
LEFT JOIN taxonomie.taxref taxon ON obs.cd_nom = taxon.cd_nom
LEFT JOIN ref_nomenclatures.t_nomenclatures n ON obs.st::character varying::text = n.id_nomenclature::character varying::text
) o
LEFT JOIN (
SELECT
visit.id_base_site,
visit.id_base_visit,
visit.visit_date_min,
visit.presence_poisson,
visit.num_passage
FROM ( SELECT vb.id_base_site,
vb.id_base_visit,
vb.visit_date_min,
vc.data -> 'presence_poisson'::text AS presence_poisson,
vc.data -> 'num_passage'::text AS num_passage
FROM gn_monitoring.t_base_visits vb
LEFT JOIN gn_monitoring.t_visit_complements vc ON vb.id_base_visit = vc.id_base_visit) visit

) v ON o.id_base_visit_o = v.id_base_visit) ov
INNER JOIN ( SELECT
site.id_sites_group,
site.id_base_site,
site.base_site_name,
st_x(ST_Centroid(site.geom)) AS coordonnee_x,
st_y(ST_Centroid(site.geom))AS coordonnee_y,
n1.label_fr AS milieu_aquatique

FROM ( SELECT
sc.data -> 'milieu_aquatique'::text AS ma,

sc.id_module,
sb.id_base_site,
sb.id_inventor,
sb.id_digitiser,
sb.id_nomenclature_type_site,
sb.base_site_name,
sb.base_site_description,
sb.base_site_code,
sb.first_use_date,
sb.geom,
sb.geom_local,
sb.altitude_min,
sb.altitude_max,
sb.uuid_base_site,
sb.meta_create_date,
sb.meta_update_date,
sc.id_sites_group
FROM gn_monitoring.t_base_sites sb
LEFT JOIN gn_monitoring.t_site_complements sc ON sb.id_base_site = sc.id_base_site) site
INNER JOIN (select id_module, module_code from gn_commons.t_modules WHERE lower(module_code)='popamphibien') m ON site.id_module::character varying::text = m.id_module::character varying::text
LEFT JOIN ref_nomenclatures.t_nomenclatures n1 ON site.ma::character varying::text = n1.id_nomenclature::character varying::text
) s ON s.id_base_site = ov.id_base_site) ovs

LEFT JOIN ( SELECT
a.id_dataset,
a.id_sites_group,
a.sites_group_name AS nom_aire,
c.nom_com AS commune,
n.label_fr AS categories_paysageres
FROM ( SELECT t_sites_groups.id_sites_group,
t_sites_groups.sites_group_name,
(t_sites_groups.data -> 'commune'::text) ->> 0 AS commune,
t_sites_groups.data -> 'categories_paysageres'::text AS cp,
t_sites_groups.data -> 'id_dataset'::text AS id_dataset
FROM gn_monitoring.t_sites_groups) a
LEFT JOIN ref_nomenclatures.t_nomenclatures n ON a.cp::text = n.id_nomenclature::text
LEFT JOIN ref_geo.li_municipalities c ON a.commune::character varying::text = c.insee_com::text) aire ON aire.id_sites_group = ovs.id_sites_group
order by (aire.id_sites_group,ovs.id, ovs.id_base_visit);

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