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September 2021 release
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@lschriml
lschriml committed Oct 1, 2021
1 parent 137837a commit e6649c3
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Showing 120 changed files with 20,329 additions and 10,338 deletions.
198 changes: 136 additions & 62 deletions src/ontology/HumanDO.obo
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409 changes: 354 additions & 55 deletions src/ontology/HumanDO.owl
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940 changes: 847 additions & 93 deletions src/ontology/doid-base.owl
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28 changes: 0 additions & 28 deletions src/ontology/doid-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -13352,7 +13352,6 @@ Declaration(ObjectProperty(obo:RO_0001000))
Declaration(ObjectProperty(obo:RO_0002220))
Declaration(ObjectProperty(obo:RO_0002452))
Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO#_is_a>))
Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/doid.owl#disease_has_feature>))
Declaration(AnnotationProperty(obo:IAO_0000115))
Declaration(AnnotationProperty(obo:IAO_0000119))
Declaration(AnnotationProperty(obo:IAO_0000700))
Expand Down Expand Up @@ -13719,13 +13718,6 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:http://geneontology.org/d
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/RO#_is_a> "disease_ontology"^^xsd:string)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/RO#_is_a> "is_a"^^xsd:string)

# Object Property: <http://purl.obolibrary.org/obo/doid.owl#disease_has_feature> (disease has feature)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:http://purl.obolibrary.org/obo/RO_0004029") obo:IAO_0000115 <http://purl.obolibrary.org/obo/doid.owl#disease_has_feature> "A relationship between a disease and some feature of that disease, where the feature is either a phenotype or an isolated disease."^^xsd:string)
AnnotationAssertion(oboInOwl:id <http://purl.obolibrary.org/obo/doid.owl#disease_has_feature> "RO:0004029"^^xsd:string)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/doid.owl#disease_has_feature> "disease has feature"^^xsd:string)
SubObjectPropertyOf(<http://purl.obolibrary.org/obo/doid.owl#disease_has_feature> obo:RO_0040035)



############################
Expand Down Expand Up @@ -31617,8 +31609,6 @@ SubClassOf(obo:DOID_0060353 obo:DOID_0060379)
SubClassOf(obo:DOID_0060353 ObjectSomeValuesFrom(obo:IDO_0000664 obo:GENO_0000147))
SubClassOf(obo:DOID_0060353 ObjectSomeValuesFrom(obo:RO_0002200 obo:HP_0000272))
SubClassOf(obo:DOID_0060353 ObjectSomeValuesFrom(obo:RO_0002200 obo:HP_0000347))
SubClassOf(obo:DOID_0060353 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/doid.owl#disease_has_feature> obo:DOID_10907))
SubClassOf(obo:DOID_0060353 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/doid.owl#disease_has_feature> obo:DOID_674))

# Class: obo:DOID_0060354 (Stormorken syndrome)

Expand Down Expand Up @@ -34400,7 +34390,6 @@ AnnotationAssertion(oboInOwl:id obo:DOID_0060537 "DOID:0060537"^^xsd:string)
AnnotationAssertion(rdfs:label obo:DOID_0060537 "mitochondrial complex II deficiency"@en)
SubClassOf(obo:DOID_0060537 obo:DOID_700)
SubClassOf(obo:DOID_0060537 ObjectSomeValuesFrom(obo:RO_0004019 obo:SO_0001537))
SubClassOf(obo:DOID_0060537 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/doid.owl#disease_has_feature> obo:DOID_0060041))

# Class: obo:DOID_0060538 (purpura fulminans)

Expand Down Expand Up @@ -40848,7 +40837,6 @@ AnnotationAssertion(oboInOwl:id obo:DOID_0070171 "DOID:0070171"^^xsd:string)
AnnotationAssertion(rdfs:label obo:DOID_0070171 "spermatogenic failure 12"^^xsd:string)
SubClassOf(obo:DOID_0070171 obo:DOID_0111910)
SubClassOf(obo:DOID_0070171 ObjectSomeValuesFrom(obo:IDO_0000664 obo:GENO_0000147))
SubClassOf(obo:DOID_0070171 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/doid.owl#disease_has_feature> obo:DOID_14227))

# Class: obo:DOID_0070172 (spermatogenic failure 15)

Expand Down Expand Up @@ -43035,8 +43023,6 @@ SubClassOf(obo:DOID_0070331 ObjectSomeValuesFrom(obo:IDO_0000664 obo:GENO_000014
SubClassOf(obo:DOID_0070331 ObjectSomeValuesFrom(obo:RO_0002200 obo:HP_0002579))
SubClassOf(obo:DOID_0070331 ObjectSomeValuesFrom(obo:RO_0002200 obo:HP_0004326))
SubClassOf(obo:DOID_0070331 ObjectSomeValuesFrom(obo:RO_0002452 obo:SYMP_0000369))
SubClassOf(obo:DOID_0070331 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/doid.owl#disease_has_feature> obo:DOID_539))
SubClassOf(obo:DOID_0070331 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/doid.owl#disease_has_feature> obo:SYMP_0000369))

# Class: obo:DOID_0070332 (multiple mitochondrial dysfunctions syndrome 6)

Expand Down Expand Up @@ -49552,9 +49538,6 @@ SubClassOf(obo:DOID_0080568 ObjectSomeValuesFrom(obo:RO_0002200 obo:HP_0001272))
SubClassOf(obo:DOID_0080568 ObjectSomeValuesFrom(obo:RO_0002200 obo:HP_0006817))
SubClassOf(obo:DOID_0080568 ObjectSomeValuesFrom(obo:RO_0002200 obo:HP_0007431))
SubClassOf(obo:DOID_0080568 ObjectSomeValuesFrom(obo:RO_0004019 obo:HP_0001197))
SubClassOf(obo:DOID_0080568 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/doid.owl#disease_has_feature> obo:DOID_1059))
SubClassOf(obo:DOID_0080568 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/doid.owl#disease_has_feature> obo:DOID_1686))
SubClassOf(obo:DOID_0080568 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/doid.owl#disease_has_feature> obo:DOID_83))

# Class: obo:DOID_0080569 (congenital disorder of glycosylation Ir)

Expand Down Expand Up @@ -53743,7 +53726,6 @@ AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_0080982 "disease_ontology"
AnnotationAssertion(oboInOwl:id obo:DOID_0080982 "DOID:0080982"^^xsd:string)
AnnotationAssertion(rdfs:label obo:DOID_0080982 "X-linked mental retardation-hypotonic facies syndrome-1"@en)
SubClassOf(obo:DOID_0080982 obo:DOID_0060309)
SubClassOf(obo:DOID_0080982 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/doid.owl#disease_has_feature> obo:DOID_1059))

# Class: obo:DOID_0080984 (X-linked intellectual developmental disorder 109)

Expand Down Expand Up @@ -60641,7 +60623,6 @@ SubClassOf(obo:DOID_0110332 ObjectSomeValuesFrom(obo:IDO_0000664 obo:GENO_000014
SubClassOf(obo:DOID_0110332 ObjectSomeValuesFrom(obo:RO_0002200 obo:HP_0000488))
SubClassOf(obo:DOID_0110332 ObjectSomeValuesFrom(obo:RO_0002200 obo:HP_0000563))
SubClassOf(obo:DOID_0110332 ObjectSomeValuesFrom(obo:RO_0004019 obo:HP_0001197))
SubClassOf(obo:DOID_0110332 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/doid.owl#disease_has_feature> obo:DOID_83))

# Class: obo:DOID_0110333 (Leber congenital amaurosis 7)

Expand Down Expand Up @@ -72942,9 +72923,6 @@ SubClassOf(obo:DOID_0111277 obo:DOID_3146)
SubClassOf(obo:DOID_0111277 ObjectSomeValuesFrom(obo:IDO_0000664 obo:GENO_0000148))
SubClassOf(obo:DOID_0111277 ObjectSomeValuesFrom(obo:RO_0002200 obo:HP_0000580))
SubClassOf(obo:DOID_0111277 ObjectSomeValuesFrom(obo:RO_0002200 obo:HP_0003756))
SubClassOf(obo:DOID_0111277 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/doid.owl#disease_has_feature> obo:DOID_0050700))
SubClassOf(obo:DOID_0111277 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/doid.owl#disease_has_feature> obo:DOID_0050758))
SubClassOf(obo:DOID_0111277 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/doid.owl#disease_has_feature> obo:DOID_9993))

# Class: obo:DOID_0111278 (histiocytosis-lymphadenopathy plus syndrome)

Expand Down Expand Up @@ -74445,7 +74423,6 @@ SubClassOf(obo:DOID_0111390 ObjectSomeValuesFrom(obo:IDO_0000664 obo:GENO_000014
SubClassOf(obo:DOID_0111390 ObjectSomeValuesFrom(obo:RO_0002200 obo:HP_0000280))
SubClassOf(obo:DOID_0111390 ObjectSomeValuesFrom(obo:RO_0002200 obo:HP_0100543))
SubClassOf(obo:DOID_0111390 ObjectSomeValuesFrom(obo:RO_0002452 obo:SYMP_0000047))
SubClassOf(obo:DOID_0111390 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/doid.owl#disease_has_feature> obo:DOID_0050700))

# Class: obo:DOID_0111391 (mucopolysaccharidosis IVA)

Expand Down Expand Up @@ -82078,7 +82055,6 @@ AnnotationAssertion(oboInOwl:id obo:DOID_0111916 "DOID:0111916"^^xsd:string)
AnnotationAssertion(rdfs:label obo:DOID_0111916 "spermatogenic failure 28"^^xsd:string)
SubClassOf(obo:DOID_0111916 obo:DOID_0111910)
SubClassOf(obo:DOID_0111916 ObjectSomeValuesFrom(obo:IDO_0000664 obo:GENO_0000148))
SubClassOf(obo:DOID_0111916 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/doid.owl#disease_has_feature> obo:DOID_14227))

# Class: obo:DOID_0111917 (spermatogenic failure 43)

Expand Down Expand Up @@ -85159,7 +85135,6 @@ AnnotationAssertion(rdfs:label obo:DOID_0112151 "corpus callosum agenesis-abnorm
SubClassOf(obo:DOID_0112151 obo:DOID_225)
SubClassOf(obo:DOID_0112151 ObjectSomeValuesFrom(obo:IDO_0000664 obo:GENO_0000936))
SubClassOf(obo:DOID_0112151 ObjectSomeValuesFrom(obo:RO_0002200 obo:HP_0001257))
SubClassOf(obo:DOID_0112151 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/doid.owl#disease_has_feature> obo:DOID_1059))

# Class: obo:DOID_0112152 (CHIME syndrome)

Expand Down Expand Up @@ -161004,9 +160979,6 @@ AnnotationAssertion(rdfs:comment obo:DOID_5688 "OMIM mapping confirmed by DO. [L
AnnotationAssertion(rdfs:label obo:DOID_5688 "Werner syndrome"^^xsd:string)
SubClassOf(obo:DOID_5688 obo:DOID_225)
SubClassOf(obo:DOID_5688 ObjectSomeValuesFrom(obo:IDO_0000664 obo:GENO_0000148))
SubClassOf(obo:DOID_5688 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/doid.owl#disease_has_feature> obo:DOID_11476))
SubClassOf(obo:DOID_5688 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/doid.owl#disease_has_feature> obo:DOID_1936))
SubClassOf(obo:DOID_5688 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/doid.owl#disease_has_feature> obo:DOID_83))

# Class: obo:DOID_5690 (well-differentiated liposarcoma)

Expand Down
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