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weekly release
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@elviram
elviram committed May 6, 2016
1 parent 1824944 commit 62b77d4
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Showing 77 changed files with 1,245,867 additions and 39,964 deletions.
479 changes: 247 additions & 232 deletions src/ontology/catalog-v001.xml
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18 changes: 10 additions & 8 deletions src/ontology/doid-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -10,14 +10,14 @@ Prefix(oboInOwl:=<http://www.geneontology.org/formats/oboInOwl#>)


Ontology(<http://purl.obolibrary.org/obo/doid.owl>
<http://purl.obolibrary.org/obo/doid/releases/2016-04-29/doid.owl>
<http://purl.obolibrary.org/obo/doid/releases/2016-05-06/doid.owl>
Import(<http://purl.obolibrary.org/obo/doid/obo/ext.owl>)
Annotation(oboInOwl:date "29:04:2016 16:27"^^xsd:string)
Annotation(oboInOwl:default-namespace "disease_ontology"^^xsd:string)
Annotation(oboInOwl:auto-generated-by "OBO-Edit 2.3.1"^^xsd:string)
Annotation(oboInOwl:saved-by "elvira"^^xsd:string)
Annotation(rdfs:comment "This work is licensed under a Creative Commons Attribution 3.0 Unported License http://creativecommons.org/licenses/by/3.0/."^^xsd:string)
Annotation(oboInOwl:saved-by "elvira"^^xsd:string)
Annotation(oboInOwl:hasOBOFormatVersion "1.2"^^xsd:string)
Annotation(oboInOwl:date "06:05:2016 16:27"^^xsd:string)

Declaration(Class(obo:DOID_0001816))
AnnotationAssertion(oboInOwl:id obo:DOID_0001816 "DOID:0001816"^^xsd:string)
Expand Down Expand Up @@ -13025,8 +13025,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060315 "MSH:D017733"^^xsd:strin
AnnotationAssertion(rdfs:label obo:DOID_0060315 "oral hairy leukoplakia"^^xsd:string)
AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_0060315 "disease_ontology"^^xsd:string)
AnnotationAssertion(oboInOwl:id obo:DOID_0060315 "DOID:0060315"^^xsd:string)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:http://en.wikipedia.org/wiki/Hairy_leukoplakia"^^xsd:string) obo:IAO_0000115 obo:DOID_0060315 "A mouth disease characterized by a white patch on the side of the tongue with a corrugated or hairy appearance; caused by Epstein-Barr virus."^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060315 "SNOMEDCT_US_2015_03_01:58918007"^^xsd:string)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:http://en.wikipedia.org/wiki/Hairy_leukoplakia"^^xsd:string) obo:IAO_0000115 obo:DOID_0060315 "A mouth disease characterized by a white patch on the side of the tongue with a corrugated or hairy appearance; caused by Epstein-Barr virus."^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060315 "ICD10CM:K13.3"^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060315 "SNOMEDCT_US_2015_03_01:414952002"^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060315 "SNOMEDCT_US_2015_03_01:196569003"^^xsd:string)
Expand Down Expand Up @@ -35721,8 +35721,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_12801 "SNOMEDCT_US_2015_03_01:25
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "SNOMEDCT_2005_07_31:59990008"^^xsd:string) oboInOwl:hasExactSynonym obo:DOID_12801 "Mucopolysaccharidosis, MPS-III-B (disorder)"^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_12801 "MSH:D009084"^^xsd:string)
AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_12801 "NAGLU DEFICIENCY"^^xsd:string)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MTHICD9_2006:277.5"^^xsd:string) oboInOwl:hasExactSynonym obo:DOID_12801 "Sanfilippo's syndrome"^^xsd:string)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "SNOMEDCT_2005_07_31:190936000"^^xsd:string) oboInOwl:hasExactSynonym obo:DOID_12801 "Sanfilippo's syndrome"^^xsd:string)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MTHICD9_2006:277.5"^^xsd:string) oboInOwl:hasExactSynonym obo:DOID_12801 "Sanfilippo's syndrome"^^xsd:string)
AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_12801 "disease_ontology"^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_12801 "NCI:C61262"^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_12801 "UMLS_CUI:C0086647"^^xsd:string)
Expand Down Expand Up @@ -36791,8 +36791,8 @@ SubClassOf(obo:DOID_12986 obo:DOID_9500)
Declaration(Class(obo:DOID_12987))
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "SNOMEDCT_2005_07_31:72885007"^^xsd:string) oboInOwl:hasExactSynonym obo:DOID_12987 "Granulopenia"^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_12987 "SNOMEDCT_US_2015_03_01:17182001"^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_12987 "SNOMEDCT_US_2015_03_01:310589001"^^xsd:string)
AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_12987 "disease_ontology"^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_12987 "SNOMEDCT_US_2015_03_01:310589001"^^xsd:string)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "SNOMEDCT_2005_07_31:191350006"^^xsd:string) oboInOwl:hasExactSynonym obo:DOID_12987 "Agranulocytosis NOS (disorder)"^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_12987 "NCI:C2863"^^xsd:string)
AnnotationAssertion(oboInOwl:id obo:DOID_12987 "DOID:12987"^^xsd:string)
Expand Down Expand Up @@ -51157,6 +51157,8 @@ AnnotationAssertion(oboInOwl:id obo:DOID_1924 "DOID:1924"^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_1924 "OMIM:146110"^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_1924 "NCI:C9227"^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_1924 "UMLS_CUI:C0020619"^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_1924 "OMIM:307300")
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_1924 "OMIM:241100")
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_1924 "MSH:D007006"^^xsd:string)
AnnotationAssertion(rdfs:label obo:DOID_1924 "hypogonadism"^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_1924 "SNOMEDCT_US_2015_03_01:48130008"^^xsd:string)
Expand Down Expand Up @@ -60341,8 +60343,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:http://en.wikipedia.org/w
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_3012 "MSH:D016864"^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_3012 "OMIM:609265"^^xsd:string)
AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_3012 "SBLA syndrome"^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_3012 "OMIM:609266"^^xsd:string)
AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_3012 "sarcoma, breast, leukaemia and adrenal gland syndrome"^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_3012 "OMIM:609266"^^xsd:string)
AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_3012 "disease_ontology"^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_3012 "ORDO:524"^^xsd:string)
AnnotationAssertion(rdfs:label obo:DOID_3012 "Li-Fraumeni syndrome"^^xsd:string)
Expand Down Expand Up @@ -94846,8 +94848,8 @@ Declaration(Class(obo:DOID_817))
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_817 "SNOMEDCT_US_2015_03_01:37925008"^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_817 "UMLS_CUI:C0027060"^^xsd:string)
AnnotationAssertion(oboInOwl:id obo:DOID_817 "DOID:817"^^xsd:string)
AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_817 "disease_ontology"^^xsd:string)
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_817 "NCI:C35786"^^xsd:string)
AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_817 "disease_ontology"^^xsd:string)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "SNOMEDCT_2005_07_31:37925008"^^xsd:string) oboInOwl:hasExactSynonym obo:DOID_817 "Interstitial myocarditis (disorder)"^^xsd:string)
AnnotationAssertion(rdfs:label obo:DOID_817 "interstitial myocarditis"^^xsd:string)
SubClassOf(obo:DOID_817 obo:DOID_819)
Expand Down
4 changes: 2 additions & 2 deletions src/ontology/doid-metadata.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -2,11 +2,11 @@ NUMBER_OF_CLASSES.INCLUDE_IMPORT_CLOSURE=true 35540
NUMBER_OF_NON_DEPRECATED_CLASSES.INCLUDE_IMPORT_CLOSURE=true 33171
NUMBER_OF_CLASSES.INCLUDE_IMPORT_CLOSURE=false 9300
NUMBER_OF_NON_DEPRECATED_CLASSES.INCLUDE_IMPORT_CLOSURE=false 6931
NUMBER_OF_AXIOMS.AXIOM_TYPE=AnnotationAssertion 118984
NUMBER_OF_AXIOMS.AXIOM_TYPE=AnnotationAssertion 118986
NUMBER_OF_AXIOMS.AXIOM_TYPE=SubClassOf 47517
NUMBER_OF_AXIOMS.AXIOM_TYPE=DisjointClasses 0
NUMBER_OF_AXIOMS.AXIOM_TYPE=EquivalentClasses 1257
NUMBER_OF_AXIOMS.AXIOM_TYPE=AnnotationAssertion 91634
NUMBER_OF_AXIOMS.AXIOM_TYPE=AnnotationAssertion 91636
NUMBER_OF_AXIOMS.AXIOM_TYPE=SubClassOf 8116
NUMBER_OF_AXIOMS.AXIOM_TYPE=DisjointClasses 0
NUMBER_OF_AXIOMS.AXIOM_TYPE=EquivalentClasses 4
Expand Down
4 changes: 2 additions & 2 deletions src/ontology/doid-non-classified-metadata.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -2,11 +2,11 @@ NUMBER_OF_CLASSES.INCLUDE_IMPORT_CLOSURE=true 35540
NUMBER_OF_NON_DEPRECATED_CLASSES.INCLUDE_IMPORT_CLOSURE=true 33171
NUMBER_OF_CLASSES.INCLUDE_IMPORT_CLOSURE=false 9300
NUMBER_OF_NON_DEPRECATED_CLASSES.INCLUDE_IMPORT_CLOSURE=false 6931
NUMBER_OF_AXIOMS.AXIOM_TYPE=AnnotationAssertion 118984
NUMBER_OF_AXIOMS.AXIOM_TYPE=AnnotationAssertion 118986
NUMBER_OF_AXIOMS.AXIOM_TYPE=SubClassOf 46532
NUMBER_OF_AXIOMS.AXIOM_TYPE=DisjointClasses 0
NUMBER_OF_AXIOMS.AXIOM_TYPE=EquivalentClasses 1257
NUMBER_OF_AXIOMS.AXIOM_TYPE=AnnotationAssertion 91634
NUMBER_OF_AXIOMS.AXIOM_TYPE=AnnotationAssertion 91636
NUMBER_OF_AXIOMS.AXIOM_TYPE=SubClassOf 7131
NUMBER_OF_AXIOMS.AXIOM_TYPE=DisjointClasses 0
NUMBER_OF_AXIOMS.AXIOM_TYPE=EquivalentClasses 4
Expand Down
6 changes: 4 additions & 2 deletions src/ontology/doid-non-classified.obo
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
format-version: 1.2
data-version: releases/2016-04-29
date: 29:04:2016 16:27
data-version: releases/2016-05-06
date: 06:05:2016 16:27
saved-by: elvira
auto-generated-by: OBO-Edit 2.3.1
subsetdef: DO_cancer_slim "DO cancer slim"
Expand Down Expand Up @@ -51211,6 +51211,8 @@ def: "A gonadal disease that is characterized by diminished functional activity
xref: MSH:D007006
xref: NCI:C9227
xref: OMIM:146110
xref: OMIM:241100
xref: OMIM:307300
xref: SNOMEDCT_US_2015_03_01:48130008
xref: UMLS_CUI:C0020619
is_a: DOID:2277 ! gonadal disease
Expand Down
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