Lint and test after every push or pull request #18
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| # vim: set tabstop=2 softtabstop=2 shiftwidth=2 expandtab: | |
| name: Lint and test after every push or pull request | |
| on: | |
| push: | |
| pull_request: | |
| workflow_call: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: '0 0 * * SUN' # run at midnight every Sunday | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| lint: | |
| name: Linting code | |
| runs-on: ubuntu-latest | |
| container: python:3 | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/[email protected] | |
| - name: Install black and flake8 | |
| run: python -m pip install black flake8 | |
| - name: Lint using black | |
| run: python -m black --check . | |
| - name: Lint using flake8 | |
| run: python -m flake8 . | |
| test: | |
| name: Run tests (${{ matrix.os }}, ${{ matrix.env }}) | |
| needs: lint | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: | |
| - ubuntu-latest | |
| - windows-latest | |
| - macos-latest | |
| env: | |
| - ci/python_311.yaml | |
| - ci/python_310.yaml | |
| - ci/python_39.yaml | |
| jdk_from: | |
| - conda-forge | |
| - system | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/[email protected] | |
| - name: Install JVM (system-wide) | |
| if: ${{ matrix.jdk_from == 'system' }} | |
| uses: actions/setup-java@v3 | |
| with: | |
| distribution: temurin | |
| java-version: 21 | |
| - name: Setup Conda | |
| uses: conda-incubator/[email protected] | |
| with: | |
| activate-environment: r5py | |
| channel-priority: strict | |
| channels: conda-forge | |
| environment-file: ${{ matrix.env }} | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| use-mamba: true | |
| - name: Install JVM (from conda-forge) | |
| if: ${{ matrix.jdk_from == 'conda-forge' }} | |
| run: conda install 'openjdk>=21' | |
| - name: Install test dependencies | |
| run: | | |
| mamba install -c conda-forge pytest pytest-asyncio pytest-cov pytest-lazy-fixture pip | |
| pip install .[tests] | |
| - name: Check environment | |
| run: | | |
| conda info | |
| conda list | |
| pip list --verbose | |
| - name: Test r5py | |
| run: python -m pytest | |
| - name: Update codecov.io | |
| uses: codecov/[email protected] | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} |