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473 Open 376 Closed
473 Open 376 Closed
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Issues list

Unable to download kraken2 database
#904 opened Jan 15, 2025 by mohitsharma-123
7
Unexpected Discrepancy in iSNV Detection Between Workflows With and Without Kraken2 Filtering
#903 opened Jan 10, 2025 by YangJingqii
Error with Suppressed Assemblies in Kraken2 Database Build (GCF_045946455.1)
#902 opened Jan 9, 2025 by dejenie21
1
Are there any plans to release the capped version of GTDB indices?
#901 opened Jan 7, 2025 by ilnamkang
Microbial vs. bacterial, viral, fungal, protozoan?
#900 opened Jan 6, 2025 by Ben7124
SILVA RNA to DNA?
#899 opened Dec 19, 2024 by DntBScrdDv
1
Custom database with GTDB taxonomy
#898 opened Dec 19, 2024 by lingrongjin
3
The problem of creating a large database
#897 opened Dec 17, 2024 by Mars-wang-24
1
Is kraken2 suitable for tNGS data?
#896 opened Dec 9, 2024 by zhuying412
1
rsync_from_ncbi.pl: FTP connection error: [Net::FTP] Timeout
#895 opened Dec 5, 2024 by DukeVimes
16
add species to PFP database
#894 opened Dec 4, 2024 by gabridinosauro
Processing of Data Slow
#893 opened Nov 27, 2024 by jhnath21
1
Database creation issues
#892 opened Nov 27, 2024 by jhnath21
1
processing paired reads
#891 opened Nov 27, 2024 by pedres
Empty fields in Kraken2 report file generated with version 2.1.3 and PlusPF database break Bracken downstream analysis
#888 opened Nov 12, 2024 by Seb-vb
5
High Memory Usage (1TB) for Creating a Kraken2 Database with 400GB of Genomes
#887 opened Nov 7, 2024 by florian-labadie
1
Unable to download Viral Library
#886 opened Nov 4, 2024 by catastrophicmuch99
First non-comment line in pluspf_20240904 inspect.txt is truncated
#885 opened Nov 1, 2024 by yeemey
Custom DB and custom taxonomy (GTDB or similar)
#884 opened Oct 18, 2024 by osvatic
14
kraken2 2.1.9 empty taxonomic level field in k2report
#883 opened Oct 4, 2024 by GODCALLMEGOD
1
18S, ITS, COI and chloroplast data analysis with kraken2
#882 opened Oct 2, 2024 by mars188
Kraken 2 finds spurious minimizers after ambiguous regions
#881 opened Sep 17, 2024 by jtnystrom
Viral Refseq outdated on more than year in comparison with ICTV VMR.39
#880 opened Sep 12, 2024 by igortru
1
Ambiguous bases being included in confidence score calculation
#878 opened Sep 11, 2024 by mcolpus
1
1
Support zstd input
#877 opened Sep 9, 2024 by mbhall88
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