evaluate whether we want to stop suppressing errors by default in _process_one_query
method of QueryCollection
#520
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stale
issue not touched from too much time
In principle, we expect users to have "good" PDB files. Currently, we are catching errors in case there is a problem with the pdbs. Evaluate whether if all PDBs are good, errors still occur and whether we prefer by default raising them and having an option to suppress, or by default catching them and only raising a warning (as is the situation now)
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