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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,17 @@ | ||
| [tool.bumpversion] | ||
| current_version = "3.0.5" | ||
|
|
||
| [[tool.bumpversion.files]] | ||
| filename = "pyproject.toml" | ||
| search = 'version = "{current_version}"' | ||
| replace = 'version = "{new_version}"' | ||
|
|
||
| [[tool.bumpversion.files]] | ||
| filename = "CITATION.cff" | ||
| search = 'version: "{current_version}"' | ||
| replace = 'version: "{new_version}"' | ||
|
|
||
| [[tool.bumpversion.files]] | ||
| filename = "deeprank2/__init__.py" | ||
| search = '__version__ = "{current_version}"' | ||
| replace = '__version__ = "{new_version}"' |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,139 @@ | ||
| name: Draft GitHub Release | ||
|
|
||
| on: | ||
| workflow_dispatch: | ||
| inputs: | ||
| version_level: | ||
| description: "Semantic version level increase." | ||
| required: true | ||
| type: choice | ||
| options: | ||
| - patch | ||
| - minor | ||
| - major | ||
|
|
||
| permissions: | ||
| contents: write | ||
| pull-requests: write | ||
|
|
||
| jobs: | ||
| draft_release: | ||
| runs-on: "ubuntu-latest" | ||
| defaults: | ||
| run: | ||
| shell: bash -l {0} | ||
| strategy: | ||
| fail-fast: true | ||
|
|
||
| steps: | ||
| - name: Display selection | ||
| run: | | ||
| echo "Branch selected: '${{ github.ref_name }}'" | ||
| echo "Release level selected: '${{ github.event.inputs.version_level }}'" | ||
| - name: Ensure that permitted release branch was selected | ||
| if: ${{ github.ref_name == 'main' || github.ref_name == 'dev' }} | ||
| run: | | ||
| echo "Branch selected: '${{ github.ref_name }}'" | ||
| echo "Releasing from main or dev branch is not permitted, please select a different release branch." | ||
| exit 1 | ||
| - name: Check GitHub Token Validity | ||
| run: | | ||
| echo "-- Validating GitHub Token" | ||
| status_code=$(curl -o /dev/null -s -w "%{http_code}" -H "Authorization: token ${{ secrets.GH_RELEASE }}" https://api.github.com/user) | ||
| if [ "$status_code" -ne 200 ]; then | ||
| echo "Error: GitHub token is invalid or expired. Please update your token in secrets." | ||
| echo "Instructions can be found at: https://github.com/DeepRank/deeprank2/blob/main/README.dev.md#updating-the-token" | ||
| exit 1 | ||
| else | ||
| echo "GitHub token is valid." | ||
| fi | ||
| - name: Checkout repository | ||
| uses: actions/checkout@v4 | ||
| with: | ||
| # token with admin priviliges to override brach protection on main and dev | ||
| token: ${{ secrets.GH_RELEASE }} | ||
| ref: main | ||
| fetch-depth: 0 | ||
|
|
||
| - name: Configure git | ||
| run: | | ||
| git config user.email "[email protected]" | ||
| git config user.name "GitHub Actions" | ||
| git pull | ||
| - name: Merge changes into main | ||
| run: | | ||
| git switch main | ||
| git merge origin/${{ github.ref_name }} --no-ff --no-commit | ||
| git commit --no-edit | ||
| - name: Bump version | ||
| id: bump | ||
| run: | | ||
| echo "-- install bump-my-version" | ||
| python3 -m pip install bump-my-version | ||
| echo "-- bump the version" | ||
| bump-my-version bump ${{ github.event.inputs.version_level }} --commit --tag | ||
| echo "-- push bumped version" | ||
| echo "RELEASE_TAG=$(git describe --tags --abbrev=0)" >> $GITHUB_OUTPUT | ||
| git push --tags -f | ||
| git push | ||
| - name: Create GitHub Release | ||
| id: create_release | ||
| env: | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
| run: | | ||
| gh release create ${{ steps.bump.outputs.RELEASE_TAG }} \ | ||
| --title="Release ${{ steps.bump.outputs.RELEASE_TAG }}" \ | ||
| --generate-notes \ | ||
| --draft | ||
| tidy_workspace: | ||
| # only run if action above succeeds | ||
| needs: draft_release | ||
| runs-on: "ubuntu-latest" | ||
| defaults: | ||
| run: | ||
| shell: bash -l {0} | ||
|
|
||
| steps: | ||
| - name: Checkout repository | ||
| uses: actions/checkout@v4 | ||
| with: | ||
| # token with admin priviliges to override brach protection on main and dev | ||
| token: ${{ secrets.GH_RELEASE }} | ||
| fetch-depth: 0 | ||
|
|
||
| - name: Configure git | ||
| run: | | ||
| git config user.email "[email protected]" | ||
| git config user.name "GitHub Actions" | ||
| git pull | ||
| - name: Close PR | ||
| env: | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
| run: | | ||
| echo "-- searching for associated PR" | ||
| pr_number=$(gh pr list --head ${{ github.ref_name }} --json number --jq '.[0].number') | ||
| if [ -n "$pr_number" ]; then | ||
| echo "-- closing PR #$pr_number" | ||
| gh pr close $pr_number | ||
| else | ||
| echo "-- no open pull request found for branch $branch_name" | ||
| fi | ||
| - name: Merge updates into dev | ||
| run: | | ||
| git switch dev | ||
| git merge origin/main | ||
| git push | ||
| - name: Delete release branch other than main or dev | ||
| run: | | ||
| echo "-- deleting branch '${{ github.ref_name }}'" | ||
| git push origin -d ${{ github.ref_name }} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,59 @@ | ||
| target-version = "py310" | ||
| output-format = "concise" | ||
| line-length = 159 | ||
|
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| [lint] | ||
| select = ["ALL"] | ||
| pydocstyle.convention = "google" # docstring settings | ||
| ignore = [ | ||
| # Unrealistic for this code base | ||
| "PTH", # flake8-use-pathlib | ||
| "N", # naming conventions | ||
| "PLR0912", # Too many branches, | ||
| "PLR0913", # Too many arguments in function definition | ||
| "D102", # Missing docstring in public method | ||
| # Unwanted | ||
| "FBT", # Using boolean arguments | ||
| "ANN101", # Missing type annotation for `self` in method | ||
| "ANN102", # Missing type annotation for `cls` in classmethod | ||
| "ANN204", # Missing return type annotation for special (dunder) method | ||
| "B028", # No explicit `stacklevel` keyword argument found in warning | ||
| "S105", # Possible hardcoded password | ||
| "S311", # insecure random generators | ||
| "PT011", # pytest-raises-too-broad | ||
| "SIM108", # Use ternary operator | ||
| # Unwanted docstrings | ||
| "D100", # Missing module docstring | ||
| "D104", # Missing public package docstring | ||
| "D105", # Missing docstring in magic method | ||
| "D107", # Missing docstring in `__init__` | ||
| ] | ||
|
|
||
| # Autofix settings | ||
| fixable = ["ALL"] | ||
| unfixable = ["F401"] # unused imports (should not disappear while editing) | ||
| extend-safe-fixes = [ | ||
| "D415", # First line should end with a period, question mark, or exclamation point | ||
| "D300", # Use triple double quotes `"""` | ||
| "D200", # One-line docstring should fit on one line | ||
| "TCH", # Format type checking only imports | ||
| "ISC001", # Implicitly concatenated strings on a single line | ||
| "EM", # Exception message variables | ||
| "RUF013", # Implicit Optional | ||
| "B006", # Mutable default argument | ||
| ] | ||
|
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| isort.known-first-party = ["deeprank2"] | ||
|
|
||
| [lint.per-file-ignores] | ||
| "tests/*" = [ | ||
| "S101", # Use of `assert` detected | ||
| "PLR2004", # Magic value used in comparison | ||
| "D101", # Missing class docstring | ||
| "D102", # Missing docstring in public method | ||
| "D103", # Missing docstring in public function | ||
| "SLF001", # private member access | ||
| ] | ||
| "docs/*" = ["ALL"] | ||
| "tests/perf/*" = ["T201"] # Use of print statements | ||
| "*.ipynb" = ["T201", "E402", "D103"] |
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