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@DeepMicroscopy

DeepMicroscopy - Generating Deep Insights from Deep Learning in Microscopy

This is our central home for all our digital pathology projects, focusing on deep learning.

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  1. SlideRunner SlideRunner Public

    SlideRunner is a tool for massive cell annotations in whole slide images

    Python 75 10

  2. Exact Exact Public

    An open source online platform for collaborative image labeling of almost everything

    JavaScript 55 17

  3. MITOS_WSI_CCMCT MITOS_WSI_CCMCT Public

    Large-Scale Canine Cutaneous Mast Cell Tumor Dataset for Mitotic Figure Assessment on Whole Slide Images

    Jupyter Notebook 28 10

  4. MITOS_WSI_CMC MITOS_WSI_CMC Public

    Large-Scale Canine Mammary Carcinoma Dataset for Mitotic Figure Assessment on Whole Slide Images

    Jupyter Notebook 19 9

  5. MIDOG MIDOG Public

    MItosis DOmain Generalization Challenge 2021/2022

    Python 14 5

  6. MIDOGpp MIDOGpp Public

    A large, multi-domain mitotic Figure Dataset

    Python 13 8

Repositories

Showing 10 of 37 repositories
  • Exact Public

    An open source online platform for collaborative image labeling of almost everything

    DeepMicroscopy/Exact’s past year of commit activity
    JavaScript 55 MIT 17 11 0 Updated Nov 15, 2024
  • FELIX Public

    Felinae Evaluation with Layperson and ML Interaction EXperience Dataset (FELIX)

    DeepMicroscopy/FELIX’s past year of commit activity
    Jupyter Notebook 0 CC-BY-SA-4.0 0 0 0 Updated Nov 12, 2024
  • TCGA-BRCA-TumorArea-Coarse Public

    Coarse annotations of tumor areas from the TCGA-BRCA dataset

    DeepMicroscopy/TCGA-BRCA-TumorArea-Coarse’s past year of commit activity
    Python 0 0 0 0 Updated Nov 7, 2024
  • AMI-Br Public

    AMI-Br: A Dataset of Typical and Atypical Mitotic Figures on Human Breast Cancer

    DeepMicroscopy/AMI-Br’s past year of commit activity
    0 0 0 0 Updated Oct 28, 2024
  • TUPAC16_AlternativeLabels Public

    Alternative training set for the TUPAC16 auxiliary mitotic figure data set

    DeepMicroscopy/TUPAC16_AlternativeLabels’s past year of commit activity
    Jupyter Notebook 11 4 0 0 Updated Oct 22, 2024
  • EXACT-QueueRunner Public

    Repository for EXACT QueueRunner, a service that executes processing for jobs available on EXACT.

    DeepMicroscopy/EXACT-QueueRunner’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Sep 5, 2024
  • deep-learning-optimizing-linear-regresision-github-starter-course Public

    deep-learning-optimizing-linear-regresision-github-starter-course created by GitHub Classroom

    DeepMicroscopy/deep-learning-optimizing-linear-regresision-github-starter-course’s past year of commit activity
    0 0 0 0 Updated Aug 20, 2024
  • Prototype-sampling Public
    DeepMicroscopy/Prototype-sampling’s past year of commit activity
    Python 0 0 0 0 Updated Jul 10, 2024
  • QuiltCleaner Public

    Automatic cleaning of the QUILT-1M pathology dataset

    DeepMicroscopy/QuiltCleaner’s past year of commit activity
    Jupyter Notebook 3 MIT 0 0 0 Updated Jul 5, 2024
  • nnUNet Public Forked from MIC-DKFZ/nnUNet
    DeepMicroscopy/nnUNet’s past year of commit activity
    Python 2 Apache-2.0 1,770 0 0 Updated Jun 24, 2024
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