To run a pipleine for an experiment, cd into the appropriate project directory
-
Run from git hub repo:
nextflow -c conf/experiment.config run DanH-UMassMed/RNA-Seq-Nextflow -r <version> -
Run from local install:
nextflow -c conf/experiment.config run ../../RNA-Seq-Nextflow -
Additional Options:
-resume -bg -with-tower -N ${email}