Merge branch 'Novartis:main' into main #6

	name: "QC 🛠️"

	on: [push]

	jobs:
	build:
	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	matrix:
	os: ["ubuntu-latest"]
	python-version: ["3.10"]

	steps:
	- uses: actions/checkout@v2

	- name: Setup Miniconda
	uses: conda-incubator/setup-miniconda@v3
	with:
	auto-update-conda: true
	miniconda-version: "latest"
	python-version: ${{ matrix.python-version }}
	activate-environment: torchsurv

	- name: Get Date
	id: get-date
	run: echo "today=$(/bin/date -u '+%Y%m%d')" >> $GITHUB_OUTPUT
	shell: bash

	- name: Cache Conda env
	uses: actions/cache@v3
	with:
	path: ${{ env.CONDA }}/envs
	key:
	conda-${{ runner.os }}--${{ runner.arch }}--${{ steps.get-date.outputs.today }}-${{ hashFiles('dev/environment.yml') }}-${{ env.CACHE_NUMBER }}
	env:
	# Increase this value to reset cache if environment.yml has not changed
	CACHE_NUMBER: 1

	- name: Update conda environment
	run:
	conda env update -n torchsurv -f dev/environment.yml
	if: steps.cache.outputs.cache-hit != 'true'

	- name: Code QC
	shell: bash -l {0}
	run: \|
	conda activate torchsurv
	./dev/codeqc.sh

	- name: Tests
	shell: bash -l {0}
	run: \|
	conda activate torchsurv
	./dev/run-doctests.sh
	./dev/run-unittests.sh

	- name: Test-build docs
	shell: bash -l {0}
	run: \|
	conda activate torchsurv
	./dev/build-docs.sh
	tar czvf docs.tar.gz -C docs/_build/html .

	- name: 'Upload Docs Tarball'
	uses: actions/upload-artifact@v4
	with:
	name: docs.tar.gz
	path: docs.tar.gz
	retention-days: 5

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