v0.5.4 cran

Merge pull request #74 from DEploid-dev/68_new_version

68 new version

v0.5.0

• Major change

• Bump version to v0.5.0, use large amount new code for DEploid-IBD, not enabled yet

• Minor change

• Update import htmlwidget and rmarkdown

v0.4.4

DEploid_0.4.4

Major changes

• None

Bugs

• None

Improvements

• Include outliers in plotAltVsRefPlotly, plotHistWSAFPlotly, plotWSAFVsPLAFPlotly and plotObsExpWSAFPlotly

v0.4.3

This version is exactly the same as the previous two versions v0.4.2 and v0.4.2.pre. Had some troubles on CRAN regarding compiling on solaris operating system.

DEploid_0.4.2

Major changes

• None

Bugs

• None

Improvements

• Include MCMC steps as dEploid function output
• Use plotly for generating new figures, including plotAltVsRefPlotly, plotHistWSAFPlotly, plotWSAFVsPLAFPlotly and plotObsExpWSAFPlotly

v0.4.2.pre

DEploid_0.4.2

Major changes

• None

Bugs

• None

Improvements

• Include MCMC steps as dEploid function output
• Use plotly for generating new figures, including plotAltVsRefPlotly, plotHistWSAFPlotly, plotWSAFVsPLAFPlotly and plotObsExpWSAFPlotly

V0.4.2

DEploid_0.4.2

Major changes

• None

Bugs

• None

Improvements

• Include MCMC steps as dEploid function output
• Use plotly for generating new figures, including plotAltVsRefPlotly, plotHistWSAFPlotly, plotWSAFVsPLAFPlotly and plotObsExpWSAFPlotly

Version 0.4.1

DEploid_0.4.1

Major changes

• Implemented IBD method to infer the proportions first.
• Updated DEploid C++ code to the most updated version.

Bugs

• None

Improvements

• Plotting alternative allele count vs reference allele counts with colours.

Version 0.3.2

First release on CRAN at
https://cran.r-project.org/web/packages/DEploid/index.html

Major improvement

• reproducible code across platforms

Version 0.3.1

First release for DEploid R version, using source code from [https://github.com/mcveanlab/DEploid/releases/tag/v0.3-beta.1](DEploid v0.3-beta.1)