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[updated] Incorporate Cajita / Cabana::Grid load balancer #2

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wants to merge 51 commits into from
Closed

[updated] Incorporate Cajita / Cabana::Grid load balancer #2

wants to merge 51 commits into from

Commits on Sep 9, 2024

  1. ci: upgrade Kokkos version

    @cz4rs
    cz4rs committed Sep 9, 2024
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  2. remove unused variables

    @cz4rs
    cz4rs committed Sep 9, 2024
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  3. avoid redundant initialization

    @cz4rs
    cz4rs committed Sep 9, 2024
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  4. Merge pull request ECP-copa#114 from cz4rs/misc-fixes 

    General updates
    @streeve
    streeve committed Sep 9, 2024
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Commits on Sep 10, 2024

  1. add vim temporary files to gitignore

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  2. add ALL to CMakeLists.txt

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  3. first integration of ALL

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  4. format and move balance operation into neighbour update

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  5. debug printfs and pseudo unbalanced work

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  6. REVERT BEFORE MERGING increase minimum cmake version 

    Using a slighlty higher minimum cmake version allows
for automatic detection of dependencies via *_ROOT
environment variables
    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  7. update comment regarding minimum domain size

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  8. add explicit halo width via input file

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  9. add vtk particles output via 'dump * * vtk n filname*%' command

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  10. fix some warnings and potential bugs

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  11. fix resizing of pack_ranks_migrate_all

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  12. update atom initialization to not assume fully filled system

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  13. update format

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  14. use actual number of particles for balancing

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  15. REVERT BEFORE MERGING increase system box by *2

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  16. a little bit of cleanup

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  17. rename VTKDomainWriter to VTKWriter

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  18. rename vtk_domain_writer.h to vtk_writer.h

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  19. also output local work in domain output

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  20. output current, not last work

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  21. remove remaining debug output

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  22. add ALL to ci

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  23. create additional create_domain that estimates ghost_cutoff

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  24. if reading a data file, use default ghost_offset

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  25. use CabanaMD_ENABLE_ALL to enable load balancing

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  26. change ALL library detection to Cabana like automatism

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  27. use Cajita grid to balance

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  28. use CabanaMD_ENABLE_ALL to enable load balancing

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  29. update load balancer to use cajita lb

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  30. update CI

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  31. remove old explicit dependency

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  32. use CabanaMD_ENABLE_LB to enable load balancing

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  33. force LB on in CI

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  34. use fixed number of subdivisions per rank for global mesh

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  35. use cmake_dependent_option for CabanaMD_ENABLE_LB

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  36. output lb quality as well

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  37. missing space in output

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  38. rename getQuality->getImbalance

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  39. move LoadBalancer into Experimental namespace

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  40. fix vacuum initialisation of particles. now corresponds to bulk system

    @aetx @cz4rs
    aetx authored and cz4rs committed Sep 10, 2024
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  41. Fix deprecated code and remaining warnings

    @cz4rs
    cz4rs committed Sep 10, 2024
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  42. Apply clang-format

    @cz4rs
    cz4rs committed Sep 10, 2024
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  43. Add a CLI flag for creating an unbalanced system

    @cz4rs
    cz4rs committed Sep 10, 2024
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  44. Remove unused file

    @cz4rs
    cz4rs committed Sep 10, 2024
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  45. Use upstream Cabana repository

    @cz4rs
    cz4rs committed Sep 10, 2024
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  46. Revert unnecessary changes

    @cz4rs
    cz4rs committed Sep 10, 2024
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  47. Change file naming scheme 

    Place rank before timestep and add leading zeroes in the file names.
This helps ParaView deduce the order correctly.
    @cz4rs
    cz4rs committed Sep 10, 2024
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