build_book.yaml

# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
  push:
    branches: [main]
  pull_request:
    branches: [main]

name: build_book.yaml

permissions: read-all

jobs:
  R-CMD-check:
    runs-on: ${{ matrix.config.os }}

    name: ${{ matrix.config.os }} (${{ matrix.config.r }})

    strategy:
      fail-fast: false
      matrix:
        config:
          - {os: macos-latest,   r: 'release'}

    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      R_KEEP_PKG_SOURCE: yes

    steps:
      - uses: actions/checkout@v4

      - uses: r-lib/actions/setup-pandoc@v2

      - uses: r-lib/actions/setup-r@v2
        with:
          r-version: ${{ matrix.config.r }}
          http-user-agent: ${{ matrix.config.http-user-agent }}
          use-public-rspm: true


      - name: Install bookdown
        run: |
          Rscript -e "install.packages('bookdown')"

      - name: Install cowplot
        run: |
          Rscript -e "install.packages('cowplot')"

      - name: Install BiocManager
        run: |
          Rscript -e "install.packages('BiocManager')"

      - name: Install ComplexHeatmap
        run: |
          Rscript -e "BiocManager::install('ComplexHeatmap')"

      - name: Render book
        run: |
          Rscript -e "bookdown::render_book()"