Computational Genomics (BSC-CNS)
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plink-bed-reader
plink-bed-reader PublicLightweight and memory efficient reader for PLINK BED files. It supports both SNP-major and individual-major formats. Written in Python.
Python 3
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GenomeVariator
GenomeVariator PublicTool for adding genomic variants to an existing genome (in SAM/BAM/CRAM format). Currently supported variants are SNVs, indels and SVs (insertions, deletions, translocations, inversions and duplica…
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GenomeMosaicMaker
GenomeMosaicMaker PublicTool for copying read-alignments regions centered around variants (in VCF/VCF.GZ/BCF format) from existing genomes (in SAM/BAM/CRAM format) to concat them into canvas genomes (in SAM/BAM/CRAM format).
Repositories
- plink-bed-reader Public
Lightweight and memory efficient reader for PLINK BED files. It supports both SNP-major and individual-major formats. Written in Python.
Computational-Genomics-BSC/plink-bed-reader’s past year of commit activity - GenomeMosaicMaker Public
Tool for copying read-alignments regions centered around variants (in VCF/VCF.GZ/BCF format) from existing genomes (in SAM/BAM/CRAM format) to concat them into canvas genomes (in SAM/BAM/CRAM format).
Computational-Genomics-BSC/GenomeMosaicMaker’s past year of commit activity - GenomeVariator Public
Tool for adding genomic variants to an existing genome (in SAM/BAM/CRAM format). Currently supported variants are SNVs, indels and SVs (insertions, deletions, translocations, inversions and duplications). It generates realistic genomes as almost always less than 99% of the original real genome is modified.
Computational-Genomics-BSC/GenomeVariator’s past year of commit activity
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