FIX: update links to TRs

docs/_extend_docstrings.py

@@ -509,7 +509,7 @@ def extend_chew_mandelstam_s_wave() -> None:
 
     with :math:`q^2(s)` defined as :eq:`BreakupMomentumSquared`.
 
-    .. seealso:: :doc:`compwa-report:003`
+    .. seealso:: :doc:`compwa-report:003/index`
     """,
     )
 

docs/usage/dynamics/analytic-continuation.ipynb

@@ -63,7 +63,7 @@
    "source": [
     ":::{note}\n",
     "\n",
-    "Improvements to analytic continuation in AmpForm are currently being developed in {doc}`compwa-report:003` and {doc}`compwa-report:004`.\n",
+    "Improvements to analytic continuation in AmpForm are currently being developed in {doc}`compwa-report:003/index` and {doc}`compwa-report:004/index`.\n",
     "\n",
     ":::"
    ]

docs/usage/dynamics/k-matrix.ipynb

@@ -74,7 +74,7 @@
     "\n",
     ":::{note}\n",
     "\n",
-    "The $\\boldsymbol{K}$-matrix approach was originally worked worked out in {doc}`compwa-report:005`, {doc}`compwa-report:009`, and {doc}`compwa-report:010`. Those reports contained a few mistakes, which have been addressed here.\n",
+    "The $\\boldsymbol{K}$-matrix approach was originally worked worked out in {doc}`compwa-report:005/index`, {doc}`compwa-report:009/index`, and {doc}`compwa-report:010/index`. Those reports contained a few mistakes, which have been addressed here.\n",
     "\n",
     ":::\n",
     "\n",
@@ -331,7 +331,7 @@
     "\\end{eqnarray}\n",
     "$$ (K-hat-and-T-hat)\n",
     "\n",
-    "[^rho-dagger]: An unpublished primer on the $\\boldsymbol{K}$-matrix by Chung {cite}`chungPrimerKmatrixFormalism1995` uses a conjugate transpose of $\\boldsymbol{\\rho}$, e.g. $\\boldsymbol{T} = \\sqrt{\\boldsymbol{\\rho^\\dagger}} \\; \\boldsymbol{\\hat{T}} \\sqrt{\\boldsymbol{\\rho}}$. This should not matter above threshold, where the phase space factor is real, but could have effects below threshold. This is where things become tricky: on the one hand, we need to ensure that $\\boldsymbol{K}$ remains real (unitarity) and on the other, we need to take keep track of which imaginary square root we choose (**Riemann sheet**). The latter is often called the requirement of **analyticity**. This is currently being explored in {doc}`compwa-report:003` and {doc}`compwa-report:004`.\n",
+    "[^rho-dagger]: An unpublished primer on the $\\boldsymbol{K}$-matrix by Chung {cite}`chungPrimerKmatrixFormalism1995` uses a conjugate transpose of $\\boldsymbol{\\rho}$, e.g. $\\boldsymbol{T} = \\sqrt{\\boldsymbol{\\rho^\\dagger}} \\; \\boldsymbol{\\hat{T}} \\sqrt{\\boldsymbol{\\rho}}$. This should not matter above threshold, where the phase space factor is real, but could have effects below threshold. This is where things become tricky: on the one hand, we need to ensure that $\\boldsymbol{K}$ remains real (unitarity) and on the other, we need to take keep track of which imaginary square root we choose (**Riemann sheet**). The latter is often called the requirement of **analyticity**. This is currently being explored in {doc}`compwa-report:003/index` and {doc}`compwa-report:004/index`.\n",
     "\n",
     "With these definitions, we can deduce that:\n",
     "\n",

docs/usage/helicity/spin-alignment.ipynb

@@ -93,7 +93,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "As described in {doc}`compwa-report:015`, the {doc}`'standard' helicity formalism </usage/helicity/formalism>` is not suited for state transitions that have different decay topologies. For this reason, the {class}`.HelicityAmplitudeBuilder` can insert a number of Wigner-$D$ functions into the amplitude model to 'align' the final state spins of underlying {class}`~qrules.topology.Topology` instances in the full decay.\n",
+    "As described in {doc}`compwa-report:015/index`, the {doc}`'standard' helicity formalism </usage/helicity/formalism>` is not suited for state transitions that have different decay topologies. For this reason, the {class}`.HelicityAmplitudeBuilder` can insert a number of Wigner-$D$ functions into the amplitude model to 'align' the final state spins of underlying {class}`~qrules.topology.Topology` instances in the full decay.\n",
     "\n",
     "Imagine we have the following the decay:"
    ]
@@ -388,7 +388,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "For more information about these angles, see {ref}`compwa-report:015:Compute Wigner rotation angles` in {doc}`TR-015 <compwa-report:015>`."
+    "For more information about these angles, see {ref}`compwa-report:015/index:Compute Wigner rotation angles` in {doc}`TR-015 <compwa-report:015/index>`."
    ]
   }
  ],

docs/usage/kinematics.ipynb

@@ -260,7 +260,7 @@
    "metadata": {},
    "source": [
     ":::{margin}\n",
-    "This notebook originates from {doc}`compwa-report:017`.\n",
+    "This notebook originates from {doc}`compwa-report:017/index`.\n",
     ":::\n",
     "\n",
     "Kinematics for a three-body decay $0 \\to 123$ can be fully described by two **Mandelstam variables** $\\sigma_1, \\sigma_2$, because the third variable $\\sigma_3$ can be expressed in terms $\\sigma_1, \\sigma_2$, the mass $m_0$ of the initial state, and the masses $m_1, m_2, m_3$ of the final state. As can be seen, the roles of $\\sigma_1, \\sigma_2, \\sigma_3$ are interchangeable.\n",
@@ -384,7 +384,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "See {doc}`compwa-report:017` for an interactive visualization of the phase space region and an analytic expression for the phase space boundary."
+    "See {doc}`compwa-report:017/index` for an interactive visualization of the phase space region and an analytic expression for the phase space boundary."
    ]
   }
  ],

src/ampform/dynamics/form_factor.py

@@ -52,7 +52,7 @@ class BlattWeisskopfSquared(sp.Expr):
     :pdg-review:`2021; Resonances; p.9`. We normalize the form factor such that
     :math:`B_L^2(1)=1` and that :math:`B_L^2` is unitless no matter what :math:`z` is.
 
-    .. seealso:: :ref:`usage/dynamics:Form factor`, :doc:`TR-029<compwa-report:029>`,
+    .. seealso:: :ref:`usage/dynamics:Form factor`, :doc:`TR-029<compwa-report:029/index>`,
       and :cite:`chungFormulasAngularMomentumBarrier2015`.
 
     With this, the implementation becomes
@@ -94,7 +94,7 @@ def _formulate_blatt_weisskopf(ell, z) -> sp.Expr:
 class SphericalHankel1(sp.Expr):
     r"""Spherical Hankel function of the first kind for real-valued :math:`z`.
 
-    See :cite:`VonHippel:1972fg`, Equation (A12), and :doc:`TR-029<compwa-report:029>`
+    See :cite:`VonHippel:1972fg`, Equation (A12), and :doc:`TR-029<compwa-report:029/index>`
     for more info. `This page
     <https://mathworld.wolfram.com/SphericalHankelFunctionoftheFirstKind.html>`_
     explains the difference with the *general* Hankel function of the first kind,

src/ampform/dynamics/kmatrix.py

@@ -2,8 +2,8 @@
 
 .. seealso:: :doc:`/usage/dynamics/k-matrix`.
 
-This module is an implementation of :doc:`compwa-report:005`,
-:doc:`compwa-report:009`, and :doc:`compwa-report:010`. It works with classes to
+This module is an implementation of :doc:`compwa-report:005/index`,
+:doc:`compwa-report:009/index`, and :doc:`compwa-report:010/index`. It works with classes to
 keep the code organized and to enable caching of the matrix multiplications, but this
 might change once these dynamics are implemented into the amplitude builder.
 """

src/ampform/sympy/deprecated.py

@@ -31,7 +31,7 @@ class UnevaluatedExpression(sp.Expr):
     1. condense the LaTeX representation of an expression tree by providing a custom
        :meth:`_latex` method.
     2. overwrite its printer methods (see `.NumPyPrintable` and e.g.
-       :doc:`compwa-report:001`).
+       :doc:`compwa-report:001/index`).
 
     The `UnevaluatedExpression` base class makes implementations of its derived classes
     more secure by enforcing the developer to provide implementations for these methods,

src/ampform/sympy/math.py

@@ -26,7 +26,7 @@ class ComplexSqrt(NumPyPrintable):
 
     A special version :func:`~sympy.functions.elementary.miscellaneous.sqrt` that
     renders nicely as LaTeX and and can be used as a handle for lambdify printers. See
-    :doc:`compwa-report:000`, :doc:`compwa-report:001`, and
+    :doc:`compwa-report:000/index`, :doc:`compwa-report:001/index`, and
     :doc:`sympy:modules/printing` for how to implement a custom
     :func:`~sympy.utilities.lambdify.lambdify` printer.
     """

src/symplot/__init__.py

@@ -382,7 +382,7 @@ def rename_symbols(
 def substitute_indexed_symbols(expression: sp.Expr) -> sp.Expr:
     """Substitute `~sympy.tensor.indexed.IndexedBase` with symbols.
 
-    See :doc:`compwa-report:008` for more info.
+    See :doc:`compwa-report:008/index` for more info.
     """
     return expression.xreplace({
         s: _indexed_to_symbol(s)