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deps: bump the all-pip group across 1 directory with 12 updates #889

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Bumps the all-pip group with 12 updates in the /data/src directory:

Package From To
jupyter 1.0.0 1.1.1
shapely 2.0.5 2.0.6
matplotlib 3.9.1 3.9.2
rasterio 1.3.10 1.3.11
mapclassify 2.7.0 2.8.0
black 24.4.2 24.8.0
fiona 1.9.6 1.10.0
sqlalchemy 2.0.31 2.0.34
google-cloud-storage 2.18.0 2.18.2
pydantic 2.8.2 2.9.0
slack-sdk 3.31.0 3.32.0
libpysal 4.12.0 4.12.1

Updates jupyter from 1.0.0 to 1.1.1

Updates shapely from 2.0.5 to 2.0.6

Release notes

Sourced from shapely's releases.

2.0.6

Wheels are available for Python 3.13 (and still include GEOS 3.11.4).

Bug fixes:

  • Fix compatibility with NumPy 2.1.0 (#2099).

For a full changelog, see https://shapely.readthedocs.io/en/latest/release/2.x.html#version-2-0-6

Changelog

Sourced from shapely's changelog.

2.0.6 (2024-08-19)

Bug fixes:

  • Fix compatibility with NumPy 2.1.0 (#2099).

Wheels are available for Python 3.13 (and still include GEOS 3.11.4).

Commits
  • 5a4207d RLS: 2.0.6
  • c65fa42 Bump pypa/cibuildwheel from 2.19.2 to 2.20.0 (build Python 3.13 wheels) (#2103)
  • 2f411ee DOC/RLS: starts changelog for 2.0.6 (#2113)
  • 225445c BLD: suppress 'incompatible-function-pointer-types' error for clang>=16 (#2114)
  • 3ab8fbc TST/CI: enable testing Python 3.13, NumPy 2.1, GEOS 3.13 (#2105)
  • 2a83905 Fix compatibility with numpy 2.1 dev to cast GeometryType to int as ufunc inp...
  • See full diff in compare view

Updates matplotlib from 3.9.1 to 3.9.2

Release notes

Sourced from matplotlib's releases.

REL: 3.9.2

This is the second bugfix release of the 3.9.x series.

This release contains several bug-fixes and adjustments:

  • Be more resilient to I/O failures when writing font cache
  • Fix nondeterministic behavior with subplot spacing and constrained layout
  • Fix sticky edge tolerance relative to data range
  • Improve formatting of image values in cases of singular norms

Windows wheels now bundle the MSVC runtime DLL statically to avoid inconsistencies with other wheels and random crashes depending on import order.

Commits
  • a254b68 REL: 3.9.2
  • 056f307 DOC: Create release notes for 3.9.2
  • 8d867ce Merge branch 'v3.9.1-doc' into v3.9.x
  • 7be8675 Merge pull request #28687 from QuLogic/static-msvc
  • 3ed3d7b Merge pull request #28695 from meeseeksmachine/auto-backport-of-pr-27797-on-v...
  • 8a62afa BLD: Include MSVCP140 runtime statically
  • 81be26f Merge pull request #28688 from QuLogic/auto-backport-of-pr-28668-on-v3.9.x
  • d88a582 Backport PR #27797: DOC: Use video files for saving animations
  • e3159ba Merge pull request #28692 from meeseeksmachine/auto-backport-of-pr-28632-on-v...
  • 465401e Backport PR #28632: DOC: Tell sphinx-gallery to link mpl_toolkits from our build
  • Additional commits viewable in compare view

Updates rasterio from 1.3.10 to 1.3.11

Release notes

Sourced from rasterio's releases.

1.3.11

1.3.10 can no longer build because of a deleted Numpy release, so a new Rasterio release is in order. Some key bug fixes and packaging updates are coming along for the ride.

Packaging

This release allows any Numpy version >=2.0,<3 to be used to build the package.

Wheels on PyPI include recent versions of GDAL, PROJ, Curl, and libjpeg:

  • GDAL 3.9.2 (3.9.1 on Windows)
  • PROJ 9.4.1
  • Curl 8.8.0
  • libjpeg 9f

Bug fixes

  • Leaks of CSL string lists in get/set_proj_data_search_path() have been fixed (backport of #3140).
  • Color interpretation is correctly set to "palette" after a colormap is written (backport of #3133).
Changelog

Sourced from rasterio's changelog.

1.3.11 (2024-09-03)

Packaging:

This release allows any Numpy version >=2.0,<3 to be used to build the package. That is the only source change.

Wheels on PyPI include recent versions of GDAL, PROJ, Curl, and libjpeg:

  • GDAL 3.9.2 (3.9.1 on Windows)
  • PROJ 9.4.1
  • Curl 8.8.0
  • libjpeg 9f

Bug fixes:

  • Leaks of CSL string lists in get/set_proj_data_search_path() have been fixed (backport of #3140).
  • Color interpretation is correctly set to "palette" after a colormap is written (backport of #3133).
Commits

Updates mapclassify from 2.7.0 to 2.8.0

Release notes

Sourced from mapclassify's releases.

v2.8.0

What's Changed

Enhancements

Other Changes

Full Changelog: pysal/mapclassify@v2.7.0...v2.8.0

Commits

Updates black from 24.4.2 to 24.8.0

Release notes

Sourced from black's releases.

24.8.0

Stable style

  • Fix crash when # fmt: off is used before a closing parenthesis or bracket. (#4363)

Packaging

  • Packaging metadata updated: docs are explictly linked, the issue tracker is now also linked. This improves the PyPI listing for Black. (#4345)

Parser

  • Fix regression where Black failed to parse a multiline f-string containing another multiline string (#4339)
  • Fix regression where Black failed to parse an escaped single quote inside an f-string (#4401)
  • Fix bug with Black incorrectly parsing empty lines with a backslash (#4343)
  • Fix bugs with Black's tokenizer not handling \{ inside f-strings very well (#4422)
  • Fix incorrect line numbers in the tokenizer for certain tokens within f-strings (#4423)

Performance

  • Improve performance when a large directory is listed in .gitignore (#4415)

Blackd

  • Fix blackd (and all extras installs) for docker container (#4357)
Changelog

Sourced from black's changelog.

24.8.0

Stable style

  • Fix crash when # fmt: off is used before a closing parenthesis or bracket. (#4363)

Packaging

  • Packaging metadata updated: docs are explictly linked, the issue tracker is now also linked. This improves the PyPI listing for Black. (#4345)

Parser

  • Fix regression where Black failed to parse a multiline f-string containing another multiline string (#4339)
  • Fix regression where Black failed to parse an escaped single quote inside an f-string (#4401)
  • Fix bug with Black incorrectly parsing empty lines with a backslash (#4343)
  • Fix bugs with Black's tokenizer not handling \{ inside f-strings very well (#4422)
  • Fix incorrect line numbers in the tokenizer for certain tokens within f-strings (#4423)

Performance

  • Improve performance when a large directory is listed in .gitignore (#4415)

Blackd

  • Fix blackd (and all extras installs) for docker container (#4357)
Commits
  • b965c2a Prepare release 24.8.0 (#4426)
  • 9ccf279 Document find_project_root ignoring pyproject.toml without [tool.black]...
  • 14b6e61 fix: Enhace black efficiently to skip directories listed in .gitignore (#4415)
  • b1c4dd9 fix: respect braces better in f-string parsing (#4422)
  • 4b4ae43 Fix incorrect linenos on fstring tokens with escaped newlines (#4423)
  • 7fa1faf docs: fix the installation command of extra for blackd (#4413)
  • 8827acc Bump sphinx from 7.3.7 to 7.4.0 in /docs (#4404)
  • b0da11d Bump furo from 2024.5.6 to 2024.7.18 in /docs (#4409)
  • 721dff5 fix: avoid formatting backslash strings inside f-strings (#4401)
  • 7e2afc9 Update actions/checkout to v4 to stop node deprecation warnings (#4379)
  • Additional commits viewable in compare view

Updates fiona from 1.9.6 to 1.10.0

Release notes

Sourced from fiona's releases.

1.10.0

This is 1.10.0. At last! The project has added 25 new contributors since 1.9.0, for a total of 73.

Fiona 1.10 will continue to support classic GIS programming work with a record-style data model. Rows, that is, not columns.

The changes since 1.9.6 are fully described in the changelog, split across pre-releases. Here is a high-level summary.

Deprecations

  • Python-style filter expressions for CLI commands are being replaced by Lisp-like expressions.
  • Some constants in the fiona.schema module will be removed in a future version.
  • The fiona.path module will be removed in a future version. This, and the previously mentioned constants, were not meant to be used by projects downstream.

New features

  • Python openers can connect filesystems implemented in Python, like fsspec or tiledb.vfs, to GDAL's own virtual filesystem machinery. In most cases, you should reply on GDAL's built-in virtual filesystem handlers. On the other hand, if you have unique or proprietary data access protocols, then fiona's new openers may be useful.
  • Fiona's CLI has three new commands, filter (strictly speaking, a new mode of this command), map, and reduce. These provide some great features for Unix-style data processing pipelines and are designed to work well with jq and programs of that nature.

Other changes

This version is heavily refactored. If it's not paying off for you, let us know!

PyPI wheels

The binary wheels on PyPI include GDAL 3.9.2 (3.9.1 for Windows), GEOS 3.11.2, and PROJ 9.4.1.

GDAL and Python versions

Fiona 1.10.0 requires GDAL 3.4 and Python 3.8 or newer.

1.10.0rc1

This is the first release candidate for 1.10.0.

Changes

  • Mutable item access to Feature, Geometry, and Properties instances has been restored (reported in #1430). This usage should be avoided as instances of these classes will be immutable in a future version.
  • The setup.cfg duplicates project configuration in pyproject.toml and has been removed.

Packaging

  • PyPI wheels include GDAL 3.9.2.

Please see the CHANGES file for a more detailed enumeration of changes since version 1.10b1. Unless showstopper bugs are found in this release, expect a final 1.10.0 release in two weeks.

1.10b3

Bug fixes

  • The sketchy, semi-private Python opener interfaces of version 1.10b2 have been replaced by ABCs that are exported from fiona.abc (#1415). How to implement the interfaces and provide a custom opener is documented in test_pyopener.py and will be included in the documentation for version 1.10.0.
  • The truncate GDAL VSI plugin callback has been implemented (#1413).

... (truncated)

Changelog

Sourced from fiona's changelog.

1.10.0 (2024-09-03)

The package version, credits, and citation file have been updated. There have been no other changes since 1.10.0rc1. Fiona is the work of 73 contributors, including 25 new contributors since 1.9.0.

1.10.0rc1 (2024-08-21)

This is the first release candidate for 1.10.0.

Changes:

  • Mutable item access to Feature, Geometry, and Properties instances has been restored (reported in #1430). This usage should be avoided as instances of these classes will be immutable in a future version.
  • The setup.cfg duplicates project configuration in pyproject.toml and has been removed.

1.10b3 (2024-07-29)

Bug fixes:

  • The sketchy, semi-private Python opener interfaces of version 1.10b2 have been replaced by ABCs that are exported from fiona.abc (#1415).
  • The truncate VSI plugin callback has been implemented (#1413).

1.10b2 (2024-07-10)

Bug fixes:

  • The Pyopener registry and VSI plugin have been rewritten to avoid filename conflicts and to be compatible with multithreading. Now, a new plugin handler is registered for each instance of using an opener (#1408). Before GDAL 3.9.0 plugin handlers cannot not be removed and so it may be observed that the size of the Pyopener registry grows during the execution of a program.
  • A CSLConstList ctypedef has been added and is used where appropriate (#1404).
  • Fiona model objects have a informative, printable representation again (#1380).

Packaging:

  • PyPI wheels include GDAL 3.9.1 and curl 8.8.0.

1.10b1 (2024-04-16)

... (truncated)

Commits

Updates sqlalchemy from 2.0.31 to 2.0.34

Release notes

Sourced from sqlalchemy's releases.

2.0.34

Released: September 4, 2024

orm

  • [orm] [bug] Fixed regression caused by issue #11814 which broke support for certain flavors of PEP 593 Annotated in the type_annotation_map when builtin types such as list, dict were used without an element type. While this is an incomplete style of typing, these types nonetheless previously would be located in the type_annotation_map correctly.

    References: #11831

sqlite

  • [sqlite] [bug] Fixed regression in SQLite reflection caused by #11677 which interfered with reflection for CHECK constraints that were followed by other kinds of constraints within the same table definition. Pull request courtesy Harutaka Kawamura.

    References: #11832

2.0.33

Released: September 3, 2024

general

  • [general] [change] The pin for setuptools<69.3 in pyproject.toml has been removed. This pin was to prevent a sudden change in setuptools to use PEP 625 from taking place, which would change the file name of SQLAlchemy's source distribution on pypi to be an all lower case name, which is likely to cause problems with various build environments that expected the previous naming style. However, the presence of this pin is holding back environments that otherwise want to use a newer setuptools, so we've decided to move forward with this change, with the assumption that build environments will have largely accommodated the setuptools change by now.

    References: #11818

orm

  • [orm] [bug] [regression] Fixed regression from 1.3 where the column key used for a hybrid property might be populated with that of the underlying column that it returns, for a property that returns an ORM mapped column directly, rather than the key

... (truncated)

Commits

Updates google-cloud-storage from 2.18.0 to 2.18.2

Release notes

Sourced from google-cloud-storage's releases.

v2.18.2

2.18.2 (2024-08-08)

Bug Fixes

  • Add regression test for range read retry issue and bump dependency to fix (#1338) (0323647)

v2.18.1

2.18.1 (2024-08-05)

Bug Fixes

  • Properly escape URL construction for XML MPU API (#1333) (bf4d0e0)
Changelog

Sourced from google-cloud-storage's changelog.

2.18.2 (2024-08-08)

Bug Fixes

  • Add regression test for range read retry issue and bump dependency to fix (#1338) (0323647)

2.18.1 (2024-08-05)

Bug Fixes

  • Properly escape URL construction for XML MPU API (#1333) (bf4d0e0)
Commits
  • 85aa02f chore(main): release 2.18.2 (#1339)
  • 0323647 Fix: Add regression test for range read retry issue and bump dependency to fi...
  • 5c93503 chore(main): release 2.18.1 (#1334)
  • bf4d0e0 Fix: Properly escape URL construction for XML MPU API (#1333)
  • See full diff in compare view

Updates pydantic from 2.8.2 to 2.9.0

Release notes

Sourced from pydantic's releases.

v2.9.0 (2024-09-05)

The code released in v2.9.0 is practically identical to that of v2.9.0b2.

Check out our blog post to learn more about the release highlights!

What's Changed

Packaging

New Features

Changes

Performance

... (truncated)

Changelog

Sourced from pydantic's changelog.

v2.9.0 (2024-09-05)

GitHub release

The code released in v2.9.0 is practically identical to that of v2.9.0b2.

What's Changed

Packaging

New Features

Changes

Performance

... (truncated)

Commits

Updates slack-sdk from 3.31.0 to 3.32.0

Release notes

Sourced from slack-sdk's releases.

version 3.32.0

What's Changed

Features and Fixes

Documentation

Misc

Dependabot

New Contributors

Commits
  • 8547826 version 3.32.0 (#1558)
  • 3f94e48 Add interactivity_pointer as trigger_id alias to views.* APIs (#1556)
  • 0e8a686 feat: add support for conversations.requestShared approve, deny & `list...
  • 062b8c2 Bump prism-react-renderer from 2.3.1 to 2.4.0 in /docs (#1555)
  • 685eb97 Bump the docusaurus group in /docs with 3 updates (#1554)
  • b1f0023 chore: group docusaurus dependencies (#1553)
  • 701daac Bump @​docusaurus/types from 3.4.0 to 3.5.2 in /docs (#1550)
  • 8c17a12 Bump micromatch from 4.0.7 to 4.0.8 in /docs (#1552)
  • 2f32419 Update websockets requirement from <13,>=9.1 to >=9.1,<14 (#1551)
  • 0ceaf4b Bump @​docusaurus/module-type-aliases from 3.4.0 to 3.5.2 in /docs (#1548)
  • Additional commits viewable in compare view

Updates libpysal from 4.12.0 to 4.12.1

Release notes

Sourced from libpysal's releases.

v4.12.1

Full Changelog: pysal/libpysal@v4.12.0...v4.12.1

Commits

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Description has been truncated

@dependabot
deps: bump the all-pip group across 1 directory with 12 updates
5326223 
Bumps the all-pip group with 12 updates in the /data/src directory:

| Package | From | To |
| --- | --- | --- |
| [jupyter](https://jupyter.org) | `1.0.0` | `1.1.1` |
| [shapely](https://github.com/shapely/shapely) | `2.0.5` | `2.0.6` |
| [matplotlib](https://github.com/matplotlib/matplotlib) | `3.9.1` | `3.9.2` |
| [rasterio](https://github.com/rasterio/rasterio) | `1.3.10` | `1.3.11` |
| [mapclassify](https://github.com/pysal/mapclassify) | `2.7.0` | `2.8.0` |
| [black](https://github.com/psf/black) | `24.4.2` | `24.8.0` |
| [fiona](https://github.com/Toblerity/Fiona) | `1.9.6` | `1.10.0` |
| [sqlalchemy](https://github.com/sqlalchemy/sqlalchemy) | `2.0.31` | `2.0.34` |
| [google-cloud-storage](https://github.com/googleapis/python-storage) | `2.18.0` | `2.18.2` |
| [pydantic](https://github.com/pydantic/pydantic) | `2.8.2` | `2.9.0` |
| [slack-sdk](https://github.com/slackapi/python-slack-sdk) | `3.31.0` | `3.32.0` |
| [libpysal](https://github.com/pysal/libpysal) | `4.12.0` | `4.12.1` |



Updates `jupyter` from 1.0.0 to 1.1.1

Updates `shapely` from 2.0.5 to 2.0.6
- [Release notes](https://github.com/shapely/shapely/releases)
- [Changelog](https://github.com/shapely/shapely/blob/main/CHANGES.txt)
- [Commits](shapely/shapely@2.0.5...2.0.6)

Updates `matplotlib` from 3.9.1 to 3.9.2
- [Release notes](https://github.com/matplotlib/matplotlib/releases)
- [Commits](matplotlib/matplotlib@v3.9.1...v3.9.2)

Updates `rasterio` from 1.3.10 to 1.3.11
- [Release notes](https://github.com/rasterio/rasterio/releases)
- [Changelog](https://github.com/rasterio/rasterio/blob/1.3.11/CHANGES.txt)
- [Commits](rasterio/rasterio@1.3.10...1.3.11)

Updates `mapclassify` from 2.7.0 to 2.8.0
- [Release notes](https://github.com/pysal/mapclassify/releases)
- [Changelog](https://github.com/pysal/mapclassify/blob/main/CHANGELOG.md)
- [Commits](pysal/mapclassify@v2.7.0...v2.8.0)

Updates `black` from 24.4.2 to 24.8.0
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](psf/black@24.4.2...24.8.0)

Updates `fiona` from 1.9.6 to 1.10.0
- [Release notes](https://github.com/Toblerity/Fiona/releases)
- [Changelog](https://github.com/Toblerity/Fiona/blob/main/CHANGES.txt)
- [Commits](Toblerity/Fiona@1.9.6...1.10.0)

Updates `sqlalchemy` from 2.0.31 to 2.0.34
- [Release notes](https://github.com/sqlalchemy/sqlalchemy/releases)
- [Changelog](https://github.com/sqlalchemy/sqlalchemy/blob/main/CHANGES.rst)
- [Commits](https://github.com/sqlalchemy/sqlalchemy/commits)

Updates `google-cloud-storage` from 2.18.0 to 2.18.2
- [Release notes](https://github.com/googleapis/python-storage/releases)
- [Changelog](https://github.com/googleapis/python-storage/blob/main/CHANGELOG.md)
- [Commits](googleapis/python-storage@v2.18.0...v2.18.2)

Updates `pydantic` from 2.8.2 to 2.9.0
- [Release notes](https://github.com/pydantic/pydantic/releases)
- [Changelog](https://github.com/pydantic/pydantic/blob/main/HISTORY.md)
- [Commits](pydantic/pydantic@v2.8.2...v2.9.0)

Updates `slack-sdk` from 3.31.0 to 3.32.0
- [Release notes](https://github.com/slackapi/python-slack-sdk/releases)
- [Commits](slackapi/python-slack-sdk@v3.31.0...v3.32.0)

Updates `libpysal` from 4.12.0 to 4.12.1
- [Release notes](https://github.com/pysal/libpysal/releases)
- [Changelog](https://github.com/pysal/libpysal/blob/main/CHANGELOG.md)
- [Commits](pysal/libpysal@v4.12.0...v4.12.1)

---
updated-dependencies:
- dependency-name: jupyter
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-pip
- dependency-name: shapely
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-pip
- dependency-name: matplotlib
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-pip
- dependency-name: rasterio
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-pip
- dependency-name: mapclassify
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-pip
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-pip
- dependency-name: fiona
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-pip
- dependency-name: sqlalchemy
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-pip
- dependency-name: google-cloud-storage
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-pip
- dependency-name: pydantic
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-pip
- dependency-name: slack-sdk
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-pip
- dependency-name: libpysal
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-pip
...

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Looks like these dependencies are updatable in another way, so this is no longer needed.

@dependabot dependabot bot closed this Sep 16, 2024
@dependabot dependabot bot deleted the dependabot/pip/data/src/staging/all-pip-46ae7e0e9c branch September 16, 2024 06:17
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