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update ModelTools to new type, fix tutorials and tests, propogate eff… #994

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update ModelTools to new type, fix tutorials and tests, propogate eff… #994

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d03bd34
update ModelTools to new type, fix tutorials and tests, propogate eff…
a-charbon Jan 27, 2025
68f94ae
trying the 0.14.3 Flux version in main toml to check ci
a-charbon Feb 7, 2025
4081ac8
add Flux compat limit to /test environment
a-charbon Feb 7, 2025
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139 changes: 73 additions & 66 deletions .buildkite/Manifest-v1.11.toml
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2 changes: 1 addition & 1 deletion .buildkite/Project.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -46,4 +46,4 @@ cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd"
ClimaAnalysis = "0.5.12"
ClimaTimeSteppers = "0.7, 0.8"
Statistics = "1"
Flux = "~0.14"
Flux = "0.15, 0.16"
2 changes: 1 addition & 1 deletion Project.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -49,7 +49,7 @@ ClimaUtilities = "0.1.20"
DataFrames = "1.4"
Dates = "1"
DocStringExtensions = "0.9"
Flux = "0.14.13, 0.15"
Flux = "0.15, 0.16"
HTTP = "1.10"
Insolation = "0.9.2"
Interpolations = "0.15.1"
Expand Down
133 changes: 70 additions & 63 deletions docs/Manifest-v1.11.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@

julia_version = "1.11.3"
manifest_format = "2.0"
project_hash = "4c59d6848c7ec5834a69b02a8db26428efecdf5e"
project_hash = "9360f6a643e4949fad139b89c01a7399b067a0ed"

[[deps.ADTypes]]
git-tree-sha1 = "e1ce448a0d7f88168ffe2eeac4549c32d45a42d1"
Expand Down Expand Up @@ -216,9 +216,9 @@ version = "0.3.9"

[[deps.BandedMatrices]]
deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"]
git-tree-sha1 = "fc8d8197de6c69ad6fd01c255b6b386ca8199331"
git-tree-sha1 = "bbc6688495b031d84610e227d46c35e17fdde5f5"
uuid = "aae01518-5342-5314-be14-df237901396f"
version = "1.9.0"
version = "1.9.1"
weakdeps = ["SparseArrays"]

[deps.BandedMatrices.extensions]
Expand Down Expand Up @@ -274,9 +274,9 @@ version = "0.1.6"

[[deps.BlockArrays]]
deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"]
git-tree-sha1 = "b406207917260364a2e0287b42e4c6772cb9db88"
git-tree-sha1 = "1ded9033f6067573314b27cd4b9ff01a1ba92cff"
uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e"
version = "1.3.0"
version = "1.4.0"
weakdeps = ["BandedMatrices"]

[deps.BlockArrays.extensions]
Expand All @@ -289,10 +289,10 @@ uuid = "824d6782-a2ef-11e9-3a09-e5662e0c26f8"
version = "3.2.4"

[[deps.Bzip2_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "8873e196c2eb87962a2048b3b8e08946535864a1"
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e"
uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0"
version = "1.0.8+4"
version = "1.0.9+0"

[[deps.CEnum]]
git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc"
Expand Down Expand Up @@ -429,10 +429,10 @@ weakdeps = ["CUDA", "Krylov"]
KrylovExt = "Krylov"

[[deps.ClimaDiagnostics]]
deps = ["Accessors", "ClimaComms", "ClimaCore", "Dates", "NCDatasets", "OrderedCollections", "SciMLBase"]
git-tree-sha1 = "e9ac94af815dcae2a2ab24e54b53e76cca6258b7"
deps = ["Accessors", "ClimaComms", "ClimaCore", "ClimaUtilities", "Dates", "NCDatasets", "OrderedCollections", "SciMLBase"]
git-tree-sha1 = "a67549b46bd3629a1af5739f161bc953914f9c5e"
uuid = "1ecacbb8-0713-4841-9a07-eb5aa8a2d53f"
version = "0.2.11"
version = "0.2.12"

[[deps.ClimaLand]]
deps = ["ArtifactWrappers", "ClimaComms", "ClimaCore", "ClimaDiagnostics", "ClimaUtilities", "Dates", "DocStringExtensions", "Insolation", "Interpolations", "LazyArtifacts", "LinearAlgebra", "NCDatasets", "SciMLBase", "StaticArrays", "SurfaceFluxes", "Thermodynamics"]
Expand All @@ -453,25 +453,25 @@ version = "0.1.0"

[[deps.ClimaParams]]
deps = ["TOML"]
git-tree-sha1 = "1e17ed5997da08f1ca186df1882ef10010f70481"
git-tree-sha1 = "e8f4589e684b5053660ee3981bb2236221d5ad27"
uuid = "5c42b081-d73a-476f-9059-fd94b934656c"
version = "0.10.18"
version = "0.10.19"

[[deps.ClimaTimeSteppers]]
deps = ["ClimaComms", "Colors", "DataStructures", "DiffEqBase", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"]
git-tree-sha1 = "bd5ac9dfd8b38b86b37cebb0cd162c761906c3c0"
git-tree-sha1 = "b452132022416ad3511143230f51660a62d583b2"
uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79"
version = "0.7.40"
version = "0.8.2"
weakdeps = ["BenchmarkTools", "CUDA", "OrderedCollections", "PrettyTables", "StatsBase"]

[deps.ClimaTimeSteppers.extensions]
ClimaTimeSteppersBenchmarkToolsExt = ["CUDA", "BenchmarkTools", "OrderedCollections", "StatsBase", "PrettyTables"]

[[deps.ClimaUtilities]]
deps = ["Artifacts", "ClimaComms", "Dates"]
git-tree-sha1 = "ab44b3d5335c1a36fc9f21560a06bff373caca42"
git-tree-sha1 = "c798f5876a457e6a3c9aa6e484299b138515cb41"
uuid = "b3f4f4ca-9299-4f7f-bd9b-81e1242a7513"
version = "0.1.21"
version = "0.1.22"

[deps.ClimaUtilities.extensions]
ClimaUtilitiesClimaCoreExt = "ClimaCore"
Expand Down Expand Up @@ -502,9 +502,9 @@ version = "0.8.5"

[[deps.CodecZlib]]
deps = ["TranscodingStreams", "Zlib_jll"]
git-tree-sha1 = "bce6804e5e6044c6daab27bb533d1295e4a2e759"
git-tree-sha1 = "545a177179195e442472a1c4dc86982aa7a1bef0"
uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
version = "0.7.6"
version = "0.7.7"

[[deps.ColorBrewer]]
deps = ["Colors", "JSON"]
Expand Down Expand Up @@ -593,9 +593,9 @@ version = "0.2.3"

[[deps.ConcurrentUtilities]]
deps = ["Serialization", "Sockets"]
git-tree-sha1 = "f36e5e8fdffcb5646ea5da81495a5a7566005127"
git-tree-sha1 = "d9d26935a0bcffc87d2613ce14c527c99fc543fd"
uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb"
version = "2.4.3"
version = "2.5.0"

[[deps.ConstructionBase]]
git-tree-sha1 = "76219f1ed5771adbb096743bff43fb5fdd4c1157"
Expand Down Expand Up @@ -746,9 +746,9 @@ version = "1.15.1"

[[deps.DiskArrays]]
deps = ["LRUCache", "Mmap", "OffsetArrays"]
git-tree-sha1 = "4687e77a603fcd86738a92758086717cd06cdaae"
git-tree-sha1 = "64650943240652ebedc6c43d03cccda247b327a3"
uuid = "3c3547ce-8d99-4f5e-a174-61eb10b00ae3"
version = "0.4.8"
version = "0.4.9"

[[deps.Distances]]
deps = ["LinearAlgebra", "Statistics", "StatsAPI"]
Expand Down Expand Up @@ -850,9 +850,9 @@ version = "0.1.11"

[[deps.Expat_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "e51db81749b0777b2147fbe7b783ee79045b8e99"
git-tree-sha1 = "d55dffd9ae73ff72f1c0482454dcf2ec6c6c4a63"
uuid = "2e619515-83b5-522b-bb60-26c02a35a201"
version = "2.6.4+3"
version = "2.6.5+0"

[[deps.ExprTools]]
git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec"
Expand Down Expand Up @@ -968,9 +968,9 @@ version = "0.8.3"

[[deps.FilePathsBase]]
deps = ["Compat", "Dates"]
git-tree-sha1 = "7878ff7172a8e6beedd1dea14bd27c3c6340d361"
git-tree-sha1 = "2ec417fc319faa2d768621085cc1feebbdee686b"
uuid = "48062228-2e41-5def-b9a4-89aafe57970f"
version = "0.9.22"
version = "0.9.23"
weakdeps = ["Mmap", "Test"]

[deps.FilePathsBase.extensions]
Expand All @@ -995,9 +995,9 @@ weakdeps = ["PDMats", "SparseArrays", "Statistics"]

[[deps.FiniteDiff]]
deps = ["ArrayInterface", "LinearAlgebra", "Setfield"]
git-tree-sha1 = "84e3a47db33be7248daa6274b287507dd6ff84e8"
git-tree-sha1 = "f089ab1f834470c525562030c8cfde4025d5e915"
uuid = "6a86dc24-6348-571c-b903-95158fe2bd41"
version = "2.26.2"
version = "2.27.0"

[deps.FiniteDiff.extensions]
FiniteDiffBandedMatricesExt = "BandedMatrices"
Expand All @@ -1018,10 +1018,10 @@ uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93"
version = "0.8.5"

[[deps.Flux]]
deps = ["Adapt", "ChainRulesCore", "Compat", "Functors", "LinearAlgebra", "MLDataDevices", "MLUtils", "MacroTools", "NNlib", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "Setfield", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote"]
git-tree-sha1 = "df520a0727f843576801a0294f5be1a94be28e23"
deps = ["Adapt", "ChainRulesCore", "Compat", "EnzymeCore", "Functors", "LinearAlgebra", "MLDataDevices", "MLUtils", "MacroTools", "NNlib", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "Setfield", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote"]
git-tree-sha1 = "49d213a90b159c74e9fc2b53162b5f699b6f3516"
uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c"
version = "0.14.25"
version = "0.16.3"

[deps.Flux.extensions]
FluxAMDGPUExt = "AMDGPU"
Expand Down Expand Up @@ -1096,10 +1096,10 @@ uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf"
version = "0.1.3"

[[deps.Functors]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "64d8e93700c7a3f28f717d265382d52fac9fa1c1"
deps = ["Compat", "ConstructionBase", "LinearAlgebra", "Random"]
git-tree-sha1 = "60a0339f28a233601cb74468032b5c302d5067de"
uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196"
version = "0.4.12"
version = "0.5.2"

[[deps.Future]]
deps = ["Random"]
Expand All @@ -1114,9 +1114,9 @@ version = "3.4.0+2"

[[deps.GPUArrays]]
deps = ["Adapt", "GPUArraysCore", "KernelAbstractions", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "ScopedValues", "Serialization", "Statistics"]
git-tree-sha1 = "0ef97e93edced3d0e713f4cfd031cc9020e022b0"
git-tree-sha1 = "eea7b3a1964b4de269bb380462a9da604be7fcdb"
uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7"
version = "11.2.1"
version = "11.2.2"

[[deps.GPUArraysCore]]
deps = ["Adapt"]
Expand All @@ -1126,9 +1126,9 @@ version = "0.2.0"

[[deps.GPUCompiler]]
deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "PrecompileTools", "Preferences", "Scratch", "Serialization", "TOML", "TimerOutputs", "UUIDs"]
git-tree-sha1 = "8e30cd0b1934f03dd925416970061c1014c6686f"
git-tree-sha1 = "f38693a56bffbf30f063568cb18fabda7b9d0516"
uuid = "61eb1bfa-7361-4325-ad38-22787b887f55"
version = "1.1.0"
version = "1.1.1"

[[deps.GR]]
deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"]
Expand Down Expand Up @@ -1596,9 +1596,9 @@ version = "1.4.0"

[[deps.Latexify]]
deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"]
git-tree-sha1 = "ce5f5621cac23a86011836badfedf664a612cee4"
git-tree-sha1 = "cd714447457c660382fe634710fb56eb255ee42e"
uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316"
version = "0.16.5"
version = "0.16.6"

[deps.Latexify.extensions]
DataFramesExt = "DataFrames"
Expand Down Expand Up @@ -1771,15 +1771,16 @@ version = "2025.0.1+1"

[[deps.MLDataDevices]]
deps = ["Adapt", "Compat", "Functors", "Preferences", "Random"]
git-tree-sha1 = "85b47bc5a8bf0c886286638585df3bec7c9f8269"
git-tree-sha1 = "5e3d81d3b7cb208803ccb4b7cae8240256f842f2"
uuid = "7e8f7934-dd98-4c1a-8fe8-92b47a384d40"
version = "1.5.3"
version = "1.6.9"

[deps.MLDataDevices.extensions]
MLDataDevicesAMDGPUExt = "AMDGPU"
MLDataDevicesCUDAExt = "CUDA"
MLDataDevicesChainRulesCoreExt = "ChainRulesCore"
MLDataDevicesChainRulesExt = "ChainRules"
MLDataDevicesComponentArraysExt = "ComponentArrays"
MLDataDevicesFillArraysExt = "FillArrays"
MLDataDevicesGPUArraysExt = "GPUArrays"
MLDataDevicesMLUtilsExt = "MLUtils"
Expand All @@ -1799,6 +1800,7 @@ version = "1.5.3"
CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2"
ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66"
FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b"
GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7"
MLUtils = "f1d291b0-491e-4a28-83b9-f70985020b54"
Expand All @@ -1820,9 +1822,9 @@ version = "0.4.17"

[[deps.MLUtils]]
deps = ["ChainRulesCore", "Compat", "DataAPI", "DelimitedFiles", "FLoops", "NNlib", "Random", "ShowCases", "SimpleTraits", "Statistics", "StatsBase", "Tables", "Transducers"]
git-tree-sha1 = "7940c0af802586b97009f254aa6065000a16fa1d"
git-tree-sha1 = "85a881db183988899fb41b1b7e5cd92bae7b3538"
uuid = "f1d291b0-491e-4a28-83b9-f70985020b54"
version = "0.4.5"
version = "0.4.6"

[[deps.MPIPreferences]]
deps = ["Libdl", "Preferences"]
Expand Down Expand Up @@ -1950,9 +1952,9 @@ weakdeps = ["Adapt", "CUDA"]

[[deps.MutableArithmetics]]
deps = ["LinearAlgebra", "SparseArrays", "Test"]
git-tree-sha1 = "43122df26d27424b23577d59e2d8020f28386516"
git-tree-sha1 = "9c0bc309df575c85422232eedfb74d5a9c155401"
uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0"
version = "1.6.2"
version = "1.6.3"

[[deps.NCDatasets]]
deps = ["CFTime", "CommonDataModel", "DataStructures", "Dates", "DiskArrays", "NetCDF_jll", "NetworkOptions", "Printf"]
Expand Down Expand Up @@ -2008,9 +2010,9 @@ version = "3.1.0+2"

[[deps.NaNMath]]
deps = ["OpenLibm_jll"]
git-tree-sha1 = "fe891aea7ccd23897520db7f16931212454e277e"
git-tree-sha1 = "cc0a5deefdb12ab3a096f00a6d42133af4560d71"
uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3"
version = "1.1.1"
version = "1.1.2"

[[deps.NameResolution]]
deps = ["PrettyPrint"]
Expand Down Expand Up @@ -2118,9 +2120,14 @@ weakdeps = ["MathOptInterface"]

[[deps.Optimisers]]
deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"]
git-tree-sha1 = "c9ff5c686240c31eb8570b662dd1f66f4b183116"
git-tree-sha1 = "53ff746a3a2b232a37dbcd262ac8bbb2b18202b8"
uuid = "3bd65402-5787-11e9-1adc-39752487f4e2"
version = "0.3.4"
version = "0.4.4"
weakdeps = ["Adapt", "EnzymeCore"]

[deps.Optimisers.extensions]
OptimisersAdaptExt = ["Adapt"]
OptimisersEnzymeCoreExt = "EnzymeCore"

[[deps.Opus_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
Expand Down Expand Up @@ -2348,9 +2355,9 @@ version = "6.5.2+2"

[[deps.QuadGK]]
deps = ["DataStructures", "LinearAlgebra"]
git-tree-sha1 = "cda3b045cf9ef07a08ad46731f5a3165e56cf3da"
git-tree-sha1 = "9da16da70037ba9d701192e27befedefb91ec284"
uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc"
version = "2.11.1"
version = "2.11.2"

[deps.QuadGK.extensions]
QuadGKEnzymeExt = "Enzyme"
Expand Down Expand Up @@ -2415,9 +2422,9 @@ version = "0.6.12"

[[deps.RecursiveArrayTools]]
deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"]
git-tree-sha1 = "ea6ad53c168c7c1c2e8f870aefda269692a8a91f"
git-tree-sha1 = "fe9d37a17ab4d41a98951332ee8067f8dca8c4c2"
uuid = "731186ca-8d62-57ce-b412-fbd966d074cd"
version = "3.28.0"
version = "3.29.0"

[deps.RecursiveArrayTools.extensions]
RecursiveArrayToolsFastBroadcastExt = "FastBroadcast"
Expand Down Expand Up @@ -2484,9 +2491,9 @@ version = "0.4.2"

[[deps.Roots]]
deps = ["Accessors", "CommonSolve", "Printf"]
git-tree-sha1 = "f233e0a3de30a6eed170b8e1be0440f732fdf456"
git-tree-sha1 = "e52cf0872526c7a0b3e1af9c58a69b90e19b022e"
uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665"
version = "2.2.4"
version = "2.2.5"

[deps.Roots.extensions]
RootsChainRulesCoreExt = "ChainRulesCore"
Expand Down Expand Up @@ -2550,9 +2557,9 @@ version = "0.1.0"

[[deps.SciMLBase]]
deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"]
git-tree-sha1 = "fcb73c66a5071d4d026aa84f9950a4d1f0dadf33"
git-tree-sha1 = "46c4a97031b9437d5adbb382958820a8ee188c64"
uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
version = "2.72.1"
version = "2.72.2"

[deps.SciMLBase.extensions]
SciMLBaseChainRulesCoreExt = "ChainRulesCore"
Expand Down Expand Up @@ -3096,9 +3103,9 @@ version = "1.6.1"

[[deps.XML2_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"]
git-tree-sha1 = "a2fccc6559132927d4c5dc183e3e01048c6dcbd6"
git-tree-sha1 = "ee6f41aac16f6c9a8cab34e2f7a200418b1cc1e3"
uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a"
version = "2.13.5+0"
version = "2.13.6+0"

[[deps.XSLT_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "XML2_jll", "Zlib_jll"]
Expand Down Expand Up @@ -3269,9 +3276,9 @@ version = "1.5.7+0"

[[deps.Zygote]]
deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"]
git-tree-sha1 = "0b3c944f5d2d8b466c5d20a84c229c17c528f49e"
git-tree-sha1 = "dabc8bf48149b0220010c2d3e555b0ca84400ce1"
uuid = "e88e6eb3-aa80-5325-afca-941959d7151f"
version = "0.6.75"
version = "0.7.4"

[deps.Zygote.extensions]
ZygoteColorsExt = "Colors"
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