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| # https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates | ||
| version: 2 | ||
| updates: | ||
| - package-ecosystem: "github-actions" | ||
| directory: "/" # Location of package manifests | ||
| schedule: | ||
| interval: "weekly" |
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| name: CI | ||
| on: | ||
| pull_request: | ||
| push: | ||
| branches: | ||
| - main | ||
| tags: '*' | ||
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| # Needed to allow julia-actions/cache to delete old caches that it has created | ||
| permissions: | ||
| actions: write | ||
| contents: read | ||
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| concurrency: | ||
| group: ${{ github.workflow }}-${{ github.ref }} | ||
| cancel-in-progress: true | ||
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| jobs: | ||
| climadiagnostics: | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| matrix: | ||
| version: | ||
| - '1.9' | ||
| - '1.10' | ||
| timeout-minutes: 30 | ||
| steps: | ||
| - name: Checkout | ||
| uses: actions/checkout@v4 | ||
| - uses: julia-actions/setup-julia@latest | ||
| with: | ||
| version: ${{ matrix.version }} | ||
| - uses: julia-actions/cache@v1 | ||
| - uses: julia-actions/julia-buildpkg@latest | ||
| - uses: julia-actions/julia-runtest@latest | ||
| - uses: julia-actions/julia-processcoverage@latest | ||
| - uses: codecov/codecov-action@v4 | ||
| with: | ||
| files: lcov.info | ||
| env: | ||
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |
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| name: CompatHelper | ||
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| on: | ||
| schedule: | ||
| - cron: '00 00 * * *' | ||
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| jobs: | ||
| CompatHelper: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: julia-actions/setup-julia@latest | ||
| - name: Pkg.add("CompatHelper") | ||
| run: julia -e 'using Pkg; Pkg.add("CompatHelper")' | ||
| - name: CompatHelper.main() | ||
| env: | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
| run: julia -e 'using CompatHelper; CompatHelper.main()' |
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| name: Documentation | ||
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| on: | ||
| push: | ||
| branches: | ||
| - main | ||
| pull_request: | ||
| tags: '*' | ||
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| concurrency: | ||
| group: ${{ github.workflow }}-${{ github.ref }} | ||
| cancel-in-progress: true | ||
|
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| jobs: | ||
| build: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - uses: julia-actions/setup-julia@latest | ||
| with: | ||
| version: 1 | ||
| - name: Install dependencies | ||
| run: julia --project=docs/ -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd())); Pkg.instantiate()' | ||
| - name: Build and deploy | ||
| env: | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # For authentication with GitHub Actions token | ||
| DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }} # For authentication with SSH deploy key | ||
| run: julia --project=docs/ docs/make.jl |
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| name: TagBot | ||
| on: | ||
| issue_comment: | ||
| types: | ||
| - created | ||
| jobs: | ||
| TagBot: | ||
| if: github.event_name == 'workflow_dispatch' || github.actor == 'JuliaTagBot' | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: JuliaRegistries/TagBot@v1 | ||
| with: | ||
| token: ${{ secrets.GITHUB_TOKEN }} | ||
| ssh: ${{ secrets.DOCUMENTER_KEY }} |
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| name = "ClimaDiagnostics" | ||
| uuid = "1ecacbb8-0713-4841-9a07-eb5aa8a2d53f" | ||
| authors = ["Gabriele Bozzola <[email protected]>"] | ||
| version = "0.1.0" | ||
| version = "0.0.1" | ||
|
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| [deps] | ||
| ClimaComms = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d" | ||
| ClimaCore = "d414da3d-4745-48bb-8d80-42e94e092884" | ||
| NCDatasets = "85f8d34a-cbdd-5861-8df4-14fed0d494ab" | ||
| SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462" | ||
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| [compat] | ||
| Aqua = "0.8" | ||
| ClimaComms = "0.5" | ||
| ClimaCore = "0.13" | ||
| ClimaTimeSteppers = "0.7" | ||
| Documenter = "1" | ||
| JuliaFormatter = "1" | ||
| NCDatasets = "0.13, 0.14" | ||
| SafeTestsets = "0.1" | ||
| SciMLBase = "1, 2" | ||
| Test = "1" | ||
| julia = "1.9" | ||
|
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| [extras] | ||
| Aqua = "4c88cf16-eb10-579e-8560-4a9242c79595" | ||
| ClimaTimeSteppers = "595c0a79-7f3d-439a-bc5a-b232dc3bde79" | ||
| Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4" | ||
| JuliaFormatter = "98e50ef6-434e-11e9-1051-2b60c6c9e899" | ||
| SafeTestsets = "1bc83da4-3b8d-516f-aca4-4fe02f6d838f" | ||
| Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" | ||
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| [targets] | ||
| test = ["Aqua", "ClimaTimeSteppers", "Documenter", "JuliaFormatter", "SafeTestsets", "Test"] |
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| # `ClimaDiagnostics.jl` | ||
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| `ClimaDiagnostics.jl` | ||
| `ClimaDiagnostics.jl` | ||
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| ## Accumulation | ||
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| Several diagnostics require performing reductions, such as taking the maximum or | ||
| the average. Since it is not feasible to store all the lists of all the | ||
| intermediate values, we aggregate the results in specific storage areas (e.g., | ||
| we take `max(max(max(max(t1, t2), t3), t4), t5)` instead of `max(t1, t2, t3, t4, | ||
| t5)` In this, it is convenient to preallocate the space where we want to | ||
| accumulate the intermediate. | ||
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| Accumulation is accomplished by the `accumulate!` function. All this function | ||
| does is applying the binary `reduction_time_func` to the previous accumulated | ||
| value and the newly computed one and store the output to the accumulator. | ||
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| After an accumulated variable is output, the accumulator is reset to its natural | ||
| state. This is achieved with the `reset_accumulator!` function. | ||
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| However, we have to fill the space with something | ||
| that does not affect the reduction. This, by definition, is the identity of the | ||
| operation. The identity of the operation `+` is `0` because `x + 0 = x` for | ||
| every `x`. | ||
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| We have to know the identity for every operation we want to support. Of course, | ||
| users are welcome to define their own by adding new methods to | ||
| identity_of_reduction. | ||
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| For instance, to define the identity of the reduction `-`, one would write | ||
| ```julia | ||
| function ClimaDiagnostics.Diagnostics.identity_of_reduction(::typeof(-)) | ||
| return 0 | ||
| end | ||
| ``` | ||
| (Or add this to the `reduction_identities.jl` file.) | ||
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| # Abstract types needed across submodules | ||
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| """ | ||
| AbstractWriter | ||
| An object that knows how to save some output. | ||
| `AbstractWriter`s have to provide one function, `write_field!` | ||
| The function has to have singature | ||
| `write_field!(writer::Writer, field, diagnostic::ScheduledDiagnostic, u, p, t)` | ||
| It is up to the writer to implment this | ||
| """ | ||
| abstract type AbstractWriter end |
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