Some problems about Mapping the Fine-Scale Organization and Plasticity of the Brain Vasculature

[RenJiaY]

Hello,
I downloaded the Dataset for Mapping the fine scale organization of the vasculature on the OSFHOME.
When I use the data set, I can't find out where the training data set is. Is it in the Graph' folder? But I can't open the compressed packet in this folder. How can I open and use this gt file? Can you provide an introduction to the data set?
Thank you very much!

[ChristophKirst]

Hi,

at OSF:
https://osf.io/sa3x8/

you can find the raw data in the raw folder. Applying the tubemap pipeline correctly will give you a graph in graph-tool binarey file format gt. It is best opened by the ClearMap software as we use our own extensions to save the geometry of the graph in the file as well.
The TubeMap tutorial shows how to open and use the gt files:
https://christophkirst.github.io/ClearMap2Documentation/html/TubeMap.html

Let me know if this answers your question.