GHA: force SpaDES.tools installation in workflow #119
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| on: | |
| push: | |
| branches: | |
| - master | |
| - development | |
| pull_request: | |
| branches: | |
| - master | |
| - development | |
| name: tutorial-check | |
| jobs: | |
| tutorial-check: | |
| if: | | |
| !contains(github.event.commits[0].message, '[skip-tutocheck]') | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, nosuggests: false, r: 'release'} | |
| - {os: windows-latest, nosuggests: false, r: 'release'} | |
| - {os: ubuntu-20.04, nosuggests: false, r: 'release'} | |
| env: | |
| _R_CHECK_DEPENDS_ONLY_: ${{ matrix.config.nosuggests }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| SPADES_USE_REQUIRE: false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-java@v3 | |
| with: | |
| distribution: "oracle" | |
| java-version: 17 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: PredictiveEcology/actions/install-spatial-deps@main | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| Ncpus: 2 | |
| r-version: ${{ matrix.config.r }} | |
| use-public-rspm: false | |
| extra-repositories: 'https://cran-archive.r-project.org/' | |
| - name: Install package dependencies | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| cache: "always" | |
| cache-version: 1 | |
| packages: | | |
| any::rJava | |
| any::withr | |
| any::SpaDES.tools | |
| - name: Run tutorials - Part 1 | |
| run: | | |
| source("test/Part1_Rscript_test.R", echo = TRUE) | |
| shell: Rscript {0} | |
| - name: Run tutorials - Part 2 | |
| run: | | |
| source("test/Part2_Rscript_test.R", echo = TRUE) | |
| shell: Rscript {0} |