Skip to content

CellMigStandOrg/CMSO-samples

Repository files navigation

Samples

Samples received from CMSO to test initial development of data formats and APIs.

Folders containing sample files are named after institutes that generated the data.

Notebooks

In order to execute the notebooks, you can build the Dockerfile stored in the top-level of this repository

docker build -t cmso-jupyter .
docker run --rm -it -p 8888:8888 cmso-jupyter

Use the URL shown in the startup message, including the token, to access the notebook server from your browser.

For persistence, and to use existing notebooks, you can mount a host directory to /home/jupyter/notebooks in the container:

docker run --rm -it -p 8888:8888 -v $(pwd):/home/jupyter/notebooks cmso-jupyter