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Plant & Food Research
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assemblyqc Public
Forked from Plant-Food-Research-Open/assemblyqcA NextFlow pipeline for evaluating assembly quality
Nextflow MIT License UpdatedMay 22, 2024 -
awesome-pangenomes Public
Forked from colindaven/awesome-pangenomesA list of software for pangenomics
MIT License UpdatedApr 18, 2024 -
High-quality-genomes Public
Forked from GenomicsAotearoa/High-quality-genomesThis repository aims to hosting workflows/codes that have been developed for GA high-quality-genome projects.
Jupyter Notebook UpdatedJun 19, 2023 -
sandpit Public
Forked from PlantandFoodResearch/sandpitA demonstration repository
Jupyter Notebook UpdatedSep 7, 2022 -
Genome-Assembly-Workshop Public
Forked from GenomicsAotearoa/Genome-Assembly-WorkshopCreative Commons Zero v1.0 Universal UpdatedJun 29, 2022 -
networktutorials Public
Forked from ramellose/networktutorialsRepository for presentations and network inference tutorials
HTML Apache License 2.0 UpdatedFeb 15, 2021 -
Assembly-methods-nanopore Public
Forked from adlape95/Assembly-methods-nanoporeAssembly methods for nanopore-based metagenomic sequencing: a comparative study
HTML Creative Commons Zero v1.0 Universal UpdatedMay 18, 2020 -
mathiomica Public
Forked from gmiaslab/mathiomicaMathIOmica is a Mathematica package for omics data analyses
Mathematica Other UpdatedSep 5, 2019 -
moduledetection-evaluation Public
Forked from saeyslab/moduledetection-evaluationPython UpdatedJul 18, 2019 -
jcvi Public
Forked from tanghaibao/jcviPython utility libraries on genome assembly, annotation and comparative genomics
Python BSD 2-Clause "Simplified" License UpdatedFeb 10, 2019 -
tomahawk Public
Forked from mklarqvist/tomahawkFast calculations of linkage-disequilibrium in large-scale human cohorts
C++ MIT License UpdatedFeb 8, 2019 -
mapping_pipeline Public
Forked from ArimaGenomics/mapping_pipelineMapping pipeline for data generated using Arima-HiC
Perl MIT License UpdatedDec 6, 2018 -
crisp Public
Forked from vibansal/crispCode for multi-sample variant calling from sequence data of pooled or unpooled DNA samples
C MIT License UpdatedNov 22, 2018 -
degust Public
Forked from drpowell/degustAn interactive web-tool for RNA-seq analysis
JavaScript GNU General Public License v3.0 UpdatedOct 19, 2018 -
ElConcatenero Public
Forked from ODiogoSilva/ElConcateneroPython GNU General Public License v3.0 UpdatedMay 17, 2018 -
proc10xG Public
Forked from ucdavis-bioinformatics/proc10xGprocessing 10x genomics reads
Python Apache License 2.0 UpdatedApr 18, 2018 -
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TULIP Public
Forked from Generade-nl/TULIPTULIP - The Uncorrected Long read Itegration Pipeline
Perl UpdatedJan 15, 2018 -
gbs-pipelines Public
Forked from finlay/gbs-pipelinesDocker images for sequencing.
HTML UpdatedSep 28, 2017 -
EelSeeds Public
Forked from Generade-nl/EelSeedsScripts used to extract seeds for the European eel genome assembly
Perl UpdatedJan 27, 2017 -
mapnetnz.github.io Public
Forked from MapNetNZ/mapnetnz.github.ioMAPNet website
CSS UpdatedOct 29, 2015 -
BBS_Meeting_2015 Public
Forked from biospectrabysequencing/BBS_Meeting_2015Programme, notes, slides etc. related to BBS meeting prior to MapNet2015
Other UpdatedOct 27, 2015 -
gbs_moa Public
Forked from biospectrabysequencing/gbs_moaWorkflow for GBS in moa template format
HTML Other UpdatedOct 2, 2015 -
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