DOC: making pip install cells consistent

tutorials/cloud_access/cloud-access-intro.md

@@ -86,7 +86,7 @@ This cell will install them if needed:
 
 ```{code-cell} ipython3
 # Uncomment the next line to install dependencies if needed.
-# !pip install astropy hpgeom pandas pyarrow pyvo>=1.5 s3fs matplotlib
+# !pip install astropy hpgeom pandas pyarrow pyvo>=1.5 s3fs matplotlib astroquery
 ```
 
 ## 4. Browse buckets
@@ -167,9 +167,6 @@ To request that additional datasets be made available in cloud storage, please c
 
 # Irsa.list_collections()
 
-# # If `list_collections` is not found,
-# # uncomment the next line to update astroquery, then restart your kernel.
-# # !pip install --upgrade --pre astroquery
 ```
 
 Use PyVO to execute a search for Spitzer SEIP Super Mosaics and find cloud access information:

tutorials/cosmodc2/cosmoDC2_TAP_access.md

@@ -20,6 +20,11 @@ This tutorial demonstrates how to access the CosmoDC2 Mock V1 catalogs. More inf
 
 These catalogs can be accessed through IRSA's Virtual Ovservatory Table Access Protocol (TAP) service. See https://www.ivoa.net/documents/TAP/ for details on the protocol. This service can be accessed through Python using the PyVO library.
 
+```{code-cell} ipython3
+# Uncomment the next line to install dependencies if needed.
+# !pip install numpy matplotlib pyvo
+```
+
 ```{code-cell} ipython3
 import pyvo as vo
 ```

tutorials/firefly/NEOWISE_light_curve_demo.md

@@ -42,6 +42,11 @@ For documentation on the firefly client visit https://caltech-ipac.github.io/fir
 - *firefly_client.plot* for visualizing the light curve in the client
 - *astropy.utils.data* for downloading the catalog data via TAP query
 
+```{code-cell} ipython3
+# Uncomment the next line to install dependencies if needed.
+# !pip install firefly_client astropy
+```
+
 ```{code-cell} ipython3
 from firefly_client import FireflyClient
 import firefly_client.plot as ffplt
@@ -75,7 +80,7 @@ Setup the layout of viewer and TAP search the 'Known Solar System Object Possibl
 - We want to search the data through IRSA, which supports TAP querying, and we want it streamed directly to us via a synchronous search: <br>"https://<!---->irsa.ipac.caltech.edu/TAP/sync?"<br><br>
 - Next, we want to structure query to only retrieve (558) Carmen data from the NEOWISE-R 'Known Solar System Object Possible Association List' catalog. The table name of the catalog can be found using [IRSAViewer](https://irsa.ipac.caltech.edu/irsaviewer/?__action=layout.showDropDown&view=MultiTableSearchCmd) and clicking the **VO TAP Search** tab and changing the 'Project' to **neowiser**. We query all columns of data and we search the target by its object id, which is its name, and use the 'like' condition to only write (558) with a wildcard: <br>"QUERY=SELECT+*+FROM+neowiser_p1ba_mch+AS+n+WHERE+n.objid+like+'(558)%'"
 
-Construction of the query can be found in the [`IRSA TAP documentation page`](https://irsa.ipac.caltech.edu/docs/program_interface/TAP.html). 
+Construction of the query can be found in the [`IRSA TAP documentation page`](https://irsa.ipac.caltech.edu/docs/program_interface/TAP.html).
 
 We first add a cell to the layout that will hold the table; this cell is shown at row = 0, col = 0, with width = 4, height = 2. Once the cell is created, we can request the necessary data from the catalog and display the data as a table using the [`show_table`](https://caltech-ipac.github.io/firefly_client/api/firefly_client.FireflyClient.html#firefly_client.FireflyClient.show_table) method.
 
@@ -95,7 +100,7 @@ if r['success']:
 # if r['success']:
 #     table_url = ("https://irsa.ipac.caltech.edu/TAP/sync?QUERY=SELECT+*+FROM+neowiser_p1ba_mch+AS+n+WHERE+n.objid+like+'(558)%'")
 #     tablename = astropy.utils.data.download_file(table_url, timeout=120, cache=True)
-    
+
 #     file = fc.upload_file(tablename)
 #     fc.show_table(file, tbl_id='tableneo', title='558 Carmen Catalog', page_size=50)
 ```
@@ -131,7 +136,7 @@ hips_url = 'http://alasky.u-strasbg.fr/AllWISE/RGB-W4-W2-W1'
 
 r = fc.add_cell(2, 2, 2, 2, 'catalog-image', 'target')
 if r['success']:
-    status = fc.show_hips(viewer_id=viewer_id, plot_id='aHipsID1-1', hips_root_url = hips_url, 
+    status = fc.show_hips(viewer_id=viewer_id, plot_id='aHipsID1-1', hips_root_url = hips_url,
                           Title='HiPS-WISE', WorldPt=target)
 ```
 

tutorials/firefly/SEDs_in_Firefly.md

@@ -61,15 +61,12 @@ The packages needed for this notebook are in the `requirements.txt` file. They c
 * _firefly_client.FireflyClient_ - Python API to Firefly for displaying tables, images and charts
 * _numpy_ - for working with arrays
 * _pyvo_ - for queries to Virtual Observatory services at the archives
-* _jupytext_ - for working with Markdown notebooks. It must be installed before your Jupyterlab session is started. See [these instructions](https://github.com/NASA-NAVO/navo-workshop/blob/main/00_SETUP.md#8-handling-notebooks-in-myst-markdown-format) for helpful information.
 
 +++
 
-To run the notebook by itself, run the cell below (skip if you already have the requirements installed):
-
 ```{code-cell} ipython3
-# Install libraries if necessary by uncommenting the following
-# !pip install -r requirements.txt
+# Uncomment the next line to install dependencies if needed.
+# !pip install numpy astropy pyvo firefly_client
 ```
 
 Call the imports below:

tutorials/irsa-sia-examples/sia_2mass_allsky.md

@@ -56,6 +56,11 @@ https://irsa.ipac.caltech.edu/docs/program_interface/api_images.html
 - *astropy.utils.data* for downloading files
 - *astropy.io* to manipulate FITS files
 
+```{code-cell} ipython3
+# Uncomment the next line to install dependencies if needed.
+# !pip install matplotlib astropy pyvo
+```
+
 ```{code-cell} ipython3
 import pyvo as vo
 from astropy.coordinates import SkyCoord

tutorials/irsa-sia-examples/sia_allwise_atlas.md

@@ -59,6 +59,11 @@ https://irsa.ipac.caltech.edu/docs/program_interface/api_images.html
 - *astropy.utils.data* for downloading files
 - *astropy.io* to manipulate FITS files
 
+```{code-cell} ipython3
+# Uncomment the next line to install dependencies if needed.
+# !pip install matplotlib astropy pyvo
+```
+
 ```{code-cell} ipython3
 import pyvo as vo
 from astropy.coordinates import SkyCoord

tutorials/irsa-sia-examples/sia_cosmos.md

@@ -59,6 +59,11 @@ https://irsa.ipac.caltech.edu/docs/program_interface/api_images.html
 - *astropy.utils.data* for downloading files
 - *astropy.io* to manipulate FITS files
 
+```{code-cell} ipython3
+# Uncomment the next line to install dependencies if needed.
+# !pip install matplotlib astropy pyvo
+```
+
 ```{code-cell} ipython3
 import pyvo as vo
 from astropy.coordinates import SkyCoord

tutorials/irsa-sia-examples/siav2_seip.md

@@ -59,6 +59,11 @@ https://irsa.ipac.caltech.edu/docs/program_interface/api_images.html
 - *astropy.utils.data* for downloading files
 - *astropy.io* to manipulate FITS files
 
+```{code-cell} ipython3
+# Uncomment the next line to install dependencies if needed.
+# !pip install matplotlib astropy pyvo
+```
+
 ```{code-cell} ipython3
 import pyvo as vo
 from astropy.coordinates import SkyCoord

tutorials/openuniversesims/openuniverse2024_roman_simulated_timedomainsurvey.md

@@ -29,7 +29,7 @@ By the end of this tutorial, you will:
 ## Install and Import required modules
 
 ```{code-cell} ipython3
-# Install libraries if necessary by uncommenting the following
+# Uncomment the next line to install dependencies if needed.
 # !pip install astropy matplotlib numpy pandas pyarrow s3fs scipy
 ```
 

tutorials/openuniversesims/openuniverse2024_roman_simulated_wideareasurvey.md

@@ -27,7 +27,7 @@ By the end of this tutorial, you will learn how to do the following:
 ## Install and Import required modules
 
 ```{code-cell} ipython3
-# Install libraries if necessary by uncommenting the following
+# Uncomment the next line to install dependencies if needed.
 # !pip install astropy numpy s3fs
 ```
 

tutorials/parquet-catalog-demos/wise-allwise-catalog-demo.md

@@ -42,8 +42,8 @@ Each method accesses the parquet files a bit differently and is useful for diffe
 ## Imports
 
 ```{code-cell} ipython3
-# Uncomment the following if you have missing dependencies.
-# !pip install numpy pandas>=1.5.2 pyarrow>=10.0.1 matplotlib hpgeom astropy
+# Uncomment the next line to install dependencies if needed.
+# !pip install pandas>=1.5.2 pyarrow>=10.0.1 matplotlib hpgeom astropy
 ```
 
 ```{code-cell} ipython3