CI #332

	name: CI
	on:
	push:
	pull_request:
	schedule:
	- cron: '0 0 * * *' # Daily “At 00:00”
	workflow_dispatch: # allows you to trigger manually

	jobs:
	skip-duplicate-jobs:
	runs-on: ubuntu-latest
	if: \|
	github.repository == 'c-worthy-ocean/ocean-c-lab'
	outputs:
	should_skip: ${{ steps.skip_check.outputs.should_skip }}
	steps:
	- id: skip_check
	uses: fkirc/[email protected]
	with:
	# For workflows which are triggered concurrently with the same
	# contents, attempt to execute them exactly once.
	concurrent_skipping: 'same_content_newer'
	paths_ignore: '["/doc/"]'

	build:
	name: python-${{ matrix.python-version }}
	needs: skip-duplicate-jobs
	if: ${{ needs.skip-duplicate-jobs.outputs.should_skip != 'true' }}
	runs-on: ubuntu-latest
	defaults:
	run:
	shell: bash -l {0}
	strategy:
	fail-fast: false
	matrix:
	python-version: ['3.8', '3.9', '3.10']
	steps:
	- uses: actions/checkout@v3
	- uses: conda-incubator/setup-miniconda@v2
	with:
	channels: conda-forge,nodefaults
	channel-priority: strict
	activate-environment: c_worthy
	auto-update-conda: false
	python-version: ${{ matrix.python-version }}
	environment-file: ci/environment.yml
	mamba-version: '*'
	use-mamba: true
	miniforge-variant: Mambaforge

	- name: Install ocean-c-lab
	run: \|
	python -m pip install -e . --no-deps --force-reinstall
	conda list

	- name: Run Tests
	run: \|
	python -m pytest

	- name: Upload code coverage to Codecov
	uses: codecov/[email protected]
	with:
	file: ./coverage.xml
	flags: unittests
	env_vars: OS,PYTHON
	name: codecov-umbrella
	fail_ci_if_error: false

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