Skip to content

Parses variant report from SNVPhyl and generates annotated (ala. SnpEff) VCF files, using COMBAT-TB eXplorer database for annotation

License

Notifications You must be signed in to change notification settings

COMBAT-TB/vcf_from_snvphyl

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

18 Commits
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

vcf_from_snvphyl Build Status

This tool is essentially glue between the SNVPhyl workflow and tbvcfreport. It reads the variant report from SNVPhyl and generates annotated (ala. SnpEff) VCF files, using the COMBAT-TB eXplorer database for annotation. In the process it computes the effect of variants on genes and proteins, thus the including snptools.vcf module might be more broadly useful.

About

Parses variant report from SNVPhyl and generates annotated (ala. SnpEff) VCF files, using COMBAT-TB eXplorer database for annotation

Resources

License

Stars

Watchers

Forks

Packages

No packages published

Languages