Skip to content

CKrawczyk/ASM-consensus-text

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

11 Commits
 
 
 
 
 
 
 
 

Repository files navigation

ASM consensus text files

This script takes the caesar reduction file for ASM and turns it into a series of text files with the consensus text (one file for each subject).

This is a command line script. Show the help text with:

> python consensus_txt.py -h
usage: consensus_txt.py [-h] [-k REDUCER_KEY] [--strip-sw] [-m METADATA]
                        input_file output_folder

Turn caesar reductions from ASM into consensus text files

positional arguments:
  input_file            The reduction export from caesar or offline
                        aggregation for the workflow
  output_folder         The base folder to output files to

optional arguments:
  -h, --help            show this help message and exit
  -k REDUCER_KEY, --reducer-key REDUCER_KEY
                        The caesar reducer key for the transcription reducer.
                        This is not needed for aggregation done offline
  --strip-sw            Strip "sw-" for tag names (only used for shakespeares
                        world)
  -m METADATA, --metadata METADATA
                        Path to the panoptes subject data dump `csv` file.
                        When provided the `metadata` column will be included
                        in the output `csv` table


This script uses the following python packages:

json
pandas
progressbar
panoptes_aggregation

About

No description, website, or topics provided.

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages