organize_and_process_microscope_images

This repo contains scripts used to organize and process microscope images.

Conda environment

To set up the Conda environment used in this repo:

conda create -n process-microscope-images python=3.9 ffmpeg ffmpeg-python numpy pillow opencv

Then from inside the environment (maybe probably this is the wrong way to do this but vidstab isn’t available from Conda):

pip install vidstab